Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

Detalhes bibliográficos
Autor(a) principal: Brudey, Karine
Data de Publicação: 2006
Outros Autores: Driscoll, Jeffery R., Rigouts, Leen, Prodinger, Wolfgang M., Gori, Andrea, Al-Hajoj, Sahal A., Allix, Caroline, Aristimuño, Liselotte, Arora, Jyoti, Baumanis, Viesturs, Binder, Lothar, Cafrune, Patricia, Cataldi, Angel, Cheong, Soonfatt, Diel, Roland, Ellermeier, Christopher, Evans, Jason T., Fauville-Dufaux, Maryse, Ferdinan, Séverine, Viedma, Dario Garcia de, Garzelli, Carlo, Gazzola, Lidia, Gomes, Harrison M., Guttierez, M. Cristina, Hawkey, Peter M., van Helden, Paul D., Kadival, Gurujaj V., Kreiswirth, Barry N., Kreme, Kristin, Kubin, Milan, Kulkarni, Savita P., Liens, Benjamin, Lillebaek, Troels, Ly, Ho Minh, Martin, Carlos, Martin, Christian, Mokrousov, Igor, Narvskaïa, Olga, Ngeow, Yun Fong, Naumann, Ludmilla, Niemann, Stefan, Parwati, Ida, Rahim, Zeaur, Rasolofo- Razanamparany, Voahangy, Rasolonavalona, Tiana, Rossetti, M. Lucia, Rüsch- Gerdes, Sabine, Sajduda, Anna, Samper, Sofia, Shemyakin, Igor G., Singh, Urvashi B., Somoskovi, Akos, Skuce, Robin A., van Soolingen, Dick, Streicher, Elisabeth M., Suffys, Philip N., Tortoli, Enrico, Tracevska, Tatjana, Vincent, Véronique, Victor, Tommie C., Warren, Robin M., Yap, Sook Fan, Zaman, Khadija, Portaels, Françoise, Rastogi, Nalin, Sola, Christophe
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/40288
Resumo: Philip N Suffys; Harrison M Gomes. Oswaldo Cruz Foundation. Oswaldo Cruz Institute. Laboratory of Molecular Biology applied to Mycobacteria, Dept. Mycobacteriosis. Rio de Janeiro, RJ, Brazil.
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spelling Brudey, KarineDriscoll, Jeffery R.Rigouts, LeenProdinger, Wolfgang M.Gori, AndreaAl-Hajoj, Sahal A.Allix, CarolineAristimuño, LiselotteArora, JyotiBaumanis, ViestursBinder, LotharCafrune, PatriciaCataldi, AngelCheong, SoonfattDiel, RolandEllermeier, ChristopherEvans, Jason T.Fauville-Dufaux, MaryseFerdinan, SéverineViedma, Dario Garcia deGarzelli, CarloGazzola, LidiaGomes, Harrison M.Guttierez, M. CristinaHawkey, Peter M.van Helden, Paul D.Kadival, Gurujaj V.Kreiswirth, Barry N.Kreme, KristinKubin, MilanKulkarni, Savita P.Liens, BenjaminLillebaek, TroelsLy, Ho MinhMartin, CarlosMartin, ChristianMokrousov, IgorNarvskaïa, OlgaNgeow, Yun FongNaumann, LudmillaNiemann, StefanParwati, IdaRahim, ZeaurRasolofo- Razanamparany, VoahangyRasolonavalona, TianaRossetti, M. LuciaRüsch- Gerdes, SabineSajduda, AnnaSamper, SofiaShemyakin, Igor G.Singh, Urvashi B.Somoskovi, AkosSkuce, Robin A.van Soolingen, DickStreicher, Elisabeth M.Suffys, Philip N.Tortoli, EnricoTracevska, TatjanaVincent, VéroniqueVictor, Tommie C.Warren, Robin M.Yap, Sook FanZaman, KhadijaPortaels, FrançoiseRastogi, NalinSola, Christophe2020-03-12T13:35:38Z2020-03-12T13:35:38Z2006BRUDEY, Karine et a. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiology, v. 6, n. 23, p. 1-17, 2006.1471-2180https://www.arca.fiocruz.br/handle/icict/4028810.1186/1471-2180-6-23Philip N Suffys; Harrison M Gomes. Oswaldo Cruz Foundation. Oswaldo Cruz Institute. Laboratory of Molecular Biology applied to Mycobacteria, Dept. Mycobacteriosis. Rio de Janeiro, RJ, Brazil.AUTHORS - Karine Brudey1, Jeffrey R Driscoll2, Leen Rigouts3, Wolfgang M Prodinger4, Andrea Gori5, Sahal A Al-Hajoj6, , Caroline Allix7, Liselotte Aristimuño8, Jyoti Arora9, Viesturs Baumanis10, Lothar Binder11, Patricia Cafrune12, Angel Cataldi13, Soonfatt Cheong14, Roland Diel15, Christopher Ellermeier16, Jason T Evans17, Maryse Fauville-Dufaux7, Séverine Ferdinand1, Dario Garcia de Viedma18, Carlo Garzelli19, Lidia Gazzola5, Harrison M Gomes20, M Cristina Guttierez21, Peter M Hawkey17, Paul D van Helden22, Gurujaj V Kadival23, Barry N Kreiswirth24, Kristin Kremer25, Milan Kubin26, Savita P Kulkarni23, Benjamin Liens1, Troels Lillebaek27, Ho Minh Ly28, Carlos Martin29, Christian Martin30, Igor Mokrousov31, Olga Narvskaïa31, Yun Fong Ngeow14, Ludmilla Naumann32, Stefan Niemann33, Ida Parwati34, Zeaur Rahim35, Voahangy Rasolofo- Razanamparany36, Tiana Rasolonavalona36, M Lucia Rossetti12, Sabine Rüsch- Gerdes33, Anna Sajduda37, Sofia Samper38, Igor G Shemyakin39, Urvashi B Singh9, Akos Somoskovi40, Robin A Skuce41, Dick van Soolingen25, Elisabeth M Streicher22, Philip N Suffys20, Enrico Tortoli42, Tatjana Tracevska10, Véronique Vincent21, Tommie C Victor22, Robin M Warren22, Sook Fan Yap14, Khadiza Zaman35, Françoise Portaels3, Nalin Rastogi*1 and Christophe Sola*1 - AFFILIATIONS - 1Unité de la Tuberculose et des Mycobactéries, Institut Pasteur de Guadeloupe, Guadeloupe, 2Wadsworth Center, New York State Dept. of Health, Albany, NY, USA, 3Mycobacteriology Unit, Prince Leopold Institute of Tropical Medicine, Antwerp, Belgium, 4Dept. Hygiene Microbiology and Social Medicine, Innsbruck Medical University, Innsbruck, Austria, 5Dept of Infectious Diseases, Institut of Infectious Diseases, Milano, Italy, 6Department of Comparative Medicine, King Faisal specialist Hospital and Research Center, Riyadh, Saudi Arabia, 7Laboratoire de la Tuberculose, Institut Pasteur de Bruxelles, Belgique, 8Universidad Centrooccidental Lisandro Alvarado, Barquisimeto, Venezuela and Universidad de Zaragoza, Spain, 9All India Institute of Medical Sciences, New Delhi, India, 10Biomedical Research and Study Center, Riga, Latvia, 11Institut for Hygiene, Microbiologie and Tropical Medicine, Austria, 12Universidade Federal do Rio Grande de Soul, Brazil, 13Instituto de Biotecnologia INTA, Castelar, Argentina, 14Dept of Medical Microbiology and Pathology, faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia, School of Public Health, 15University of Düsseldorf, Heinrich-Heine-University, Düsseldorf, 16Dept of Internal Medicine II, University of Regensbourg, Germany, 17Public Health Laboratory, Hearltlands Hospital, Birmingham, UK, 18Dept of Clinical Microbiology and Infectious Diseases, Hospital Gregorio Marañon, Madrid, Spain, 19Dept. of Experimental Pathology, Medical Biotechnology, Infection and Epidemiology, Pisa University, Pisa, Italy, 20Laboratory of Molecular Biology applied to Mycobacteria, Dept. Mycobacteriosis, Oswaldo Cruz Institute, Rio de Janeiro, Brazil, 21Centre National de Référence des Mycobactéries, Institut Pasteur, Paris, France, 22MRC Centre for Molecular and Cellular Biology, Dept of medical Biochemistry, University of Stellenbosch, Tygerberg, South Africa, 23Laboratory Nuclear Medicine Section, Isotope group, Bhabha Atomic Research Centre c/T.M.H. Annexe, Parel, Mumbai-400012, India, 24Public Health Research Institute, Newark, NJ, USA, 25Mycobacteria reference unit, Diagnostic Laboratory for Infectious Diseases and Perinatal Screening, National Institute of Public Health and the Environment, Bilthoven, The Netherlands, 26Municipal Institute of Hygiene, Prague, Czech Republic, 27Statens Serum Institute, Int. Ref. lab. for Mycobacteriology, Copenhagen Denmark, 28Institute of Hygiene and Epidemiology, Hanoi, Vietnam, 29Universidad de Zaragoza, Zaragoza, Spain, 30Laboratoire de Bactério-virologie-hygiène, CHU Dupuytren, Limoges, France, 31Institut Pasteur de Saint-Petersbourg, Saint Petersbourg, Russia, 32Bavarian Health and Food Safety Authority, Oberschleissheim, Germany, 33Forschungszentrum, National Reference Center for Mycobacteria, Borstel, Germany, 34Dept of Clinical Pathology, Padjadjaran University, Dr. Hasan Sadikin Hospital, Bandung, Indonesia, 35Tuberculosis Laboratory, International Centre for Diarrhoeal Research, Dhaka, Bangladesh, 36Institut Pasteur de Madagascar, Tananarive, Madagascar, 37Dept of Genetics of Microorganisms, University of Lódz, Lodz, Poland, 38Servicio Microbiología, Hospital Universitario Miguel Servet, Zaragoza, Spain, 39State Research Center for Applied Microbiology, Obolensk, Russian Federation, 40Dept. of Respiratory Medicine School of Medicine Semmelweis University, Budapest, Hungary, 41Veterinary Sciences Division, Department of agriculture for Northern Ireland, Belfast, UK and 42Centro regionale di Riferimento per i Micobatteri, Laboratorio de Microbiologia e Virologia, Ospedale Careggi, Firenze, Italy.Múlitpla autoria - ver em Notas.The Direct Repeat locus of the Mycobacterium tuberculosis complex (MTC) is a member of the CRISPR (Clustered regularly interspaced short palindromic repeats) sequences family. Spoligotyping is the widely used PCR-based reverse-hybridization blotting technique that assays the genetic diversity of this locus and is useful both for clinical laboratory, molecular epidemiology, evolutionary and population genetics. It is easy, robust, cheap, and produces highly diverse portable numerical results, as the result of the combination of (1) Unique Events Polymorphism (UEP) (2) Insertion-Sequence-mediated genetic recombination. Genetic convergence, although rare, was also previously demonstrated. Three previous international spoligotype databases had partly revealed the global and local geographical structures of MTC bacilli populations, however, there was a need for the release of a new, more representative and extended, international spoligotyping database.engBioMed CentralMycobacterium tuberculosisDiversidade genéticaGenètica populacionaEpidemiologiaClassificaçãoQuarto banco de dados internacional de espoligotipagemMycobacterium tuberculosisGenetic diversityFourth international spoligotyping databasePopulation geneticsEpidemiologyClassificationMycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiologyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; 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dc.title.pt_BR.fl_str_mv Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
title Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
spellingShingle Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
Brudey, Karine
Mycobacterium tuberculosis
Diversidade genética
Genètica populaciona
Epidemiologia
Classificação
Quarto banco de dados internacional de espoligotipagem
Mycobacterium tuberculosis
Genetic diversity
Fourth international spoligotyping database
Population genetics
Epidemiology
Classification
title_short Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
title_full Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
title_fullStr Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
title_full_unstemmed Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
title_sort Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
author Brudey, Karine
author_facet Brudey, Karine
Driscoll, Jeffery R.
Rigouts, Leen
Prodinger, Wolfgang M.
Gori, Andrea
Al-Hajoj, Sahal A.
Allix, Caroline
Aristimuño, Liselotte
Arora, Jyoti
Baumanis, Viesturs
Binder, Lothar
Cafrune, Patricia
Cataldi, Angel
Cheong, Soonfatt
Diel, Roland
Ellermeier, Christopher
Evans, Jason T.
Fauville-Dufaux, Maryse
Ferdinan, Séverine
Viedma, Dario Garcia de
Garzelli, Carlo
Gazzola, Lidia
Gomes, Harrison M.
Guttierez, M. Cristina
Hawkey, Peter M.
van Helden, Paul D.
Kadival, Gurujaj V.
Kreiswirth, Barry N.
Kreme, Kristin
Kubin, Milan
Kulkarni, Savita P.
Liens, Benjamin
Lillebaek, Troels
Ly, Ho Minh
Martin, Carlos
Martin, Christian
Mokrousov, Igor
Narvskaïa, Olga
Ngeow, Yun Fong
Naumann, Ludmilla
Niemann, Stefan
Parwati, Ida
Rahim, Zeaur
Rasolofo- Razanamparany, Voahangy
Rasolonavalona, Tiana
Rossetti, M. Lucia
Rüsch- Gerdes, Sabine
Sajduda, Anna
Samper, Sofia
Shemyakin, Igor G.
Singh, Urvashi B.
Somoskovi, Akos
Skuce, Robin A.
van Soolingen, Dick
Streicher, Elisabeth M.
Suffys, Philip N.
Tortoli, Enrico
Tracevska, Tatjana
Vincent, Véronique
Victor, Tommie C.
Warren, Robin M.
Yap, Sook Fan
Zaman, Khadija
Portaels, Françoise
Rastogi, Nalin
Sola, Christophe
author_role author
author2 Driscoll, Jeffery R.
Rigouts, Leen
Prodinger, Wolfgang M.
Gori, Andrea
Al-Hajoj, Sahal A.
Allix, Caroline
Aristimuño, Liselotte
Arora, Jyoti
Baumanis, Viesturs
Binder, Lothar
Cafrune, Patricia
Cataldi, Angel
Cheong, Soonfatt
Diel, Roland
Ellermeier, Christopher
Evans, Jason T.
Fauville-Dufaux, Maryse
Ferdinan, Séverine
Viedma, Dario Garcia de
Garzelli, Carlo
Gazzola, Lidia
Gomes, Harrison M.
Guttierez, M. Cristina
Hawkey, Peter M.
van Helden, Paul D.
Kadival, Gurujaj V.
Kreiswirth, Barry N.
Kreme, Kristin
Kubin, Milan
Kulkarni, Savita P.
Liens, Benjamin
Lillebaek, Troels
Ly, Ho Minh
Martin, Carlos
Martin, Christian
Mokrousov, Igor
Narvskaïa, Olga
Ngeow, Yun Fong
Naumann, Ludmilla
Niemann, Stefan
Parwati, Ida
Rahim, Zeaur
Rasolofo- Razanamparany, Voahangy
Rasolonavalona, Tiana
Rossetti, M. Lucia
Rüsch- Gerdes, Sabine
Sajduda, Anna
Samper, Sofia
Shemyakin, Igor G.
Singh, Urvashi B.
Somoskovi, Akos
Skuce, Robin A.
van Soolingen, Dick
Streicher, Elisabeth M.
Suffys, Philip N.
Tortoli, Enrico
Tracevska, Tatjana
Vincent, Véronique
Victor, Tommie C.
Warren, Robin M.
Yap, Sook Fan
Zaman, Khadija
Portaels, Françoise
Rastogi, Nalin
Sola, Christophe
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author
dc.contributor.author.fl_str_mv Brudey, Karine
Driscoll, Jeffery R.
Rigouts, Leen
Prodinger, Wolfgang M.
Gori, Andrea
Al-Hajoj, Sahal A.
Allix, Caroline
Aristimuño, Liselotte
Arora, Jyoti
Baumanis, Viesturs
Binder, Lothar
Cafrune, Patricia
Cataldi, Angel
Cheong, Soonfatt
Diel, Roland
Ellermeier, Christopher
Evans, Jason T.
Fauville-Dufaux, Maryse
Ferdinan, Séverine
Viedma, Dario Garcia de
Garzelli, Carlo
Gazzola, Lidia
Gomes, Harrison M.
Guttierez, M. Cristina
Hawkey, Peter M.
van Helden, Paul D.
Kadival, Gurujaj V.
Kreiswirth, Barry N.
Kreme, Kristin
Kubin, Milan
Kulkarni, Savita P.
Liens, Benjamin
Lillebaek, Troels
Ly, Ho Minh
Martin, Carlos
Martin, Christian
Mokrousov, Igor
Narvskaïa, Olga
Ngeow, Yun Fong
Naumann, Ludmilla
Niemann, Stefan
Parwati, Ida
Rahim, Zeaur
Rasolofo- Razanamparany, Voahangy
Rasolonavalona, Tiana
Rossetti, M. Lucia
Rüsch- Gerdes, Sabine
Sajduda, Anna
Samper, Sofia
Shemyakin, Igor G.
Singh, Urvashi B.
Somoskovi, Akos
Skuce, Robin A.
van Soolingen, Dick
Streicher, Elisabeth M.
Suffys, Philip N.
Tortoli, Enrico
Tracevska, Tatjana
Vincent, Véronique
Victor, Tommie C.
Warren, Robin M.
Yap, Sook Fan
Zaman, Khadija
Portaels, Françoise
Rastogi, Nalin
Sola, Christophe
dc.subject.other.pt_BR.fl_str_mv Mycobacterium tuberculosis
Diversidade genética
Genètica populaciona
Epidemiologia
Classificação
Quarto banco de dados internacional de espoligotipagem
topic Mycobacterium tuberculosis
Diversidade genética
Genètica populaciona
Epidemiologia
Classificação
Quarto banco de dados internacional de espoligotipagem
Mycobacterium tuberculosis
Genetic diversity
Fourth international spoligotyping database
Population genetics
Epidemiology
Classification
dc.subject.en.pt_BR.fl_str_mv Mycobacterium tuberculosis
Genetic diversity
Fourth international spoligotyping database
Population genetics
Epidemiology
Classification
description Philip N Suffys; Harrison M Gomes. Oswaldo Cruz Foundation. Oswaldo Cruz Institute. Laboratory of Molecular Biology applied to Mycobacteria, Dept. Mycobacteriosis. Rio de Janeiro, RJ, Brazil.
publishDate 2006
dc.date.issued.fl_str_mv 2006
dc.date.accessioned.fl_str_mv 2020-03-12T13:35:38Z
dc.date.available.fl_str_mv 2020-03-12T13:35:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv BRUDEY, Karine et a. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiology, v. 6, n. 23, p. 1-17, 2006.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/40288
dc.identifier.issn.pt_BR.fl_str_mv 1471-2180
dc.identifier.doi.pt_BR.fl_str_mv 10.1186/1471-2180-6-23
identifier_str_mv BRUDEY, Karine et a. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiology, v. 6, n. 23, p. 1-17, 2006.
1471-2180
10.1186/1471-2180-6-23
url https://www.arca.fiocruz.br/handle/icict/40288
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
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instacron_str FIOCRUZ
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