Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites

Bibliographic Details
Main Author: Costa, Cibele Tesser da
Publication Date: 2007
Other Authors: Albuquerque, Ana Christina Sagebin, Nascimento Junior, Alfredo do, Marcelino, Francismar Correa, Pereira, Jorge Fernando
Format: Article
Language: eng
Source: Pesquisa Agropecuária Brasileira (Online)
Download full: https://seer.sct.embrapa.br/index.php/pab/article/view/7735
Summary: The objective of this work was to determine the genetic variability available for triticale (X Triticosecale Wittmack) crop improvement in Brazil. Forty-two wheat genomic microsatellites were used to estimate the molecular diversity of 54 genotypes, which constitute the base of one of the major triticale breeding programs in the country. Average heterozygosity was 0.06 and average and effective number of alleles per locus were 2.13 and 1.61, respectively, with average allelic frequency of 0.34. The set of genomic wheat microsatellites used clustered the genotypes into seven groups, even when the germplasm was originated primarily from only two triticale breeding programs, a fact reflected on the average polymorphic information content value estimated for the germplasm (0.36). The 71.42% transferability achieved for the tested microsatellites indicates the possibility of exploiting these transferable markers in further triticale genetic and breeding studies, even those mapped on the D genome of wheat, when analyzing hexaploid triticales.
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spelling Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellitesDiversidade genética de triticales brasileiros avaliada com microssatélites genômicos de trigoX Triticosecale; polymorphism information content; transferability; heterozygosity; number of alleles; frequency of allelesX Triticosecale; índice de polimorfismo; transferabilidade; heterozigosidade; número efetivo de alelos; freqüência alélicaThe objective of this work was to determine the genetic variability available for triticale (X Triticosecale Wittmack) crop improvement in Brazil. Forty-two wheat genomic microsatellites were used to estimate the molecular diversity of 54 genotypes, which constitute the base of one of the major triticale breeding programs in the country. Average heterozygosity was 0.06 and average and effective number of alleles per locus were 2.13 and 1.61, respectively, with average allelic frequency of 0.34. The set of genomic wheat microsatellites used clustered the genotypes into seven groups, even when the germplasm was originated primarily from only two triticale breeding programs, a fact reflected on the average polymorphic information content value estimated for the germplasm (0.36). The 71.42% transferability achieved for the tested microsatellites indicates the possibility of exploiting these transferable markers in further triticale genetic and breeding studies, even those mapped on the D genome of wheat, when analyzing hexaploid triticales.O objetivo deste trabalho foi determinar a variabilidade disponível para o melhoramento de triticale (X Triticosecale Wittmack) no Brasil. Quarenta e dois microssatélites de trigo foram empregados para estimar a diversidade molecular de 54 genótipos, que constituem a base de um dos principais programas de melhoramento da espécie no país. A heterozigosidade média foi 0,06, e os números médio e efetivo de alelos por lócus foram de 2,13 e 1,61, respectivamente, com freqüência alélica média de 0,34. O conjunto de microssatélites de trigo possibilitou reunir os genótipos em sete grupos, mesmo que o germoplasma utilizado seja originado de apenas duas instituições de pesquisa, o que refletiu em baixo índice de polimorfismo médio (0,36). A taxa de transferência dos marcadores testados (71,42%) indica a possibilidade de uso desses microssatélites de trigo, até mesmo os mapeados no genoma D da espécie, na análise de triticales hexaplóides em futuros trabalhos de genética e melhoramento de triticale.Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraCosta, Cibele Tesser daAlbuquerque, Ana Christina SagebinNascimento Junior, Alfredo doMarcelino, Francismar CorreaPereira, Jorge Fernando2007-11-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/7735Pesquisa Agropecuaria Brasileira; v.42, n.11, nov. 2007; 1577-1586Pesquisa Agropecuária Brasileira; v.42, n.11, nov. 2007; 1577-15861678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAenghttps://seer.sct.embrapa.br/index.php/pab/article/view/7735/4654info:eu-repo/semantics/openAccess2014-10-13T19:31:30Zoai:ojs.seer.sct.embrapa.br:article/7735Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2014-10-13T19:31:30Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
Diversidade genética de triticales brasileiros avaliada com microssatélites genômicos de trigo
title Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
spellingShingle Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
Costa, Cibele Tesser da
X Triticosecale; polymorphism information content; transferability; heterozygosity; number of alleles; frequency of alleles
X Triticosecale; índice de polimorfismo; transferabilidade; heterozigosidade; número efetivo de alelos; freqüência alélica
title_short Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
title_full Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
title_fullStr Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
title_full_unstemmed Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
title_sort Genetic diversity of Brazilian triticales evaluated with genomic wheat microsatellites
author Costa, Cibele Tesser da
author_facet Costa, Cibele Tesser da
Albuquerque, Ana Christina Sagebin
Nascimento Junior, Alfredo do
Marcelino, Francismar Correa
Pereira, Jorge Fernando
author_role author
author2 Albuquerque, Ana Christina Sagebin
Nascimento Junior, Alfredo do
Marcelino, Francismar Correa
Pereira, Jorge Fernando
author2_role author
author
author
author
dc.contributor.none.fl_str_mv

dc.contributor.author.fl_str_mv Costa, Cibele Tesser da
Albuquerque, Ana Christina Sagebin
Nascimento Junior, Alfredo do
Marcelino, Francismar Correa
Pereira, Jorge Fernando
dc.subject.por.fl_str_mv X Triticosecale; polymorphism information content; transferability; heterozygosity; number of alleles; frequency of alleles
X Triticosecale; índice de polimorfismo; transferabilidade; heterozigosidade; número efetivo de alelos; freqüência alélica
topic X Triticosecale; polymorphism information content; transferability; heterozygosity; number of alleles; frequency of alleles
X Triticosecale; índice de polimorfismo; transferabilidade; heterozigosidade; número efetivo de alelos; freqüência alélica
description The objective of this work was to determine the genetic variability available for triticale (X Triticosecale Wittmack) crop improvement in Brazil. Forty-two wheat genomic microsatellites were used to estimate the molecular diversity of 54 genotypes, which constitute the base of one of the major triticale breeding programs in the country. Average heterozygosity was 0.06 and average and effective number of alleles per locus were 2.13 and 1.61, respectively, with average allelic frequency of 0.34. The set of genomic wheat microsatellites used clustered the genotypes into seven groups, even when the germplasm was originated primarily from only two triticale breeding programs, a fact reflected on the average polymorphic information content value estimated for the germplasm (0.36). The 71.42% transferability achieved for the tested microsatellites indicates the possibility of exploiting these transferable markers in further triticale genetic and breeding studies, even those mapped on the D genome of wheat, when analyzing hexaploid triticales.
publishDate 2007
dc.date.none.fl_str_mv 2007-11-01
dc.type.none.fl_str_mv
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/7735
url https://seer.sct.embrapa.br/index.php/pab/article/view/7735
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/7735/4654
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
dc.source.none.fl_str_mv Pesquisa Agropecuaria Brasileira; v.42, n.11, nov. 2007; 1577-1586
Pesquisa Agropecuária Brasileira; v.42, n.11, nov. 2007; 1577-1586
1678-3921
0100-104x
reponame:Pesquisa Agropecuária Brasileira (Online)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Pesquisa Agropecuária Brasileira (Online)
collection Pesquisa Agropecuária Brasileira (Online)
repository.name.fl_str_mv Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv pab@sct.embrapa.br || sct.pab@embrapa.br
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