Genome wide selection (GWS) and maximization of the genetic improvement efficiency

Detalhes bibliográficos
Autor(a) principal: Resende, Marcos Deon Vilela de
Data de Publicação: 2010
Outros Autores: Lopes, Paulo Sávio, Silva, Rogério Luíz da, Pires, Ismael Eleotério
Tipo de documento: Artigo
Idioma: por
Título da fonte: Pesquisa Florestal Brasileira (Online)
Texto Completo: https://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63
Resumo: Genetic selection has been practiced by the best linear unbiased prediction (BLUP) method using phenotypic records. A first proposal for enhancement of the efficiency of this procedure was the marker assisted selection (MAS). Later, another method called genome wide selection - GWS was reported, which presents high accuracy for the selection based exclusively on markers, after predicting their genetic effects from phenotypic data in a sample of the population of selection. GWS is excellent for low heritable traits, while MAS is not. This paper presents the GWS methodology and simulates a case of its application, aiming at emphasizing its advantages over MAS. The relation between traditional BLUP and genomic BLUP is also detailed as well as the sample size required for precise estimation of the genetic values of the markers. Results revealed that the GWS can be worthy for genetic improvement. Practical experience is much needed to infer about its effectiveness.
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spelling Genome wide selection (GWS) and maximization of the genetic improvement efficiencySeleção genômica ampla (GWS) e maximização da eficiência do melhoramento genéticoGenomic selectionlinkage disequilibrium analysisfine mappinggenetic markers.Seleção genômicaanálise de desequilíbrio de ligaçãomapeamento finomarcadores molecularesGenetic selection has been practiced by the best linear unbiased prediction (BLUP) method using phenotypic records. A first proposal for enhancement of the efficiency of this procedure was the marker assisted selection (MAS). Later, another method called genome wide selection - GWS was reported, which presents high accuracy for the selection based exclusively on markers, after predicting their genetic effects from phenotypic data in a sample of the population of selection. GWS is excellent for low heritable traits, while MAS is not. This paper presents the GWS methodology and simulates a case of its application, aiming at emphasizing its advantages over MAS. The relation between traditional BLUP and genomic BLUP is also detailed as well as the sample size required for precise estimation of the genetic values of the markers. Results revealed that the GWS can be worthy for genetic improvement. Practical experience is much needed to infer about its effectiveness.A seleção genética tem sido praticada pelo procedimento BLUP, usando dados fenotípicos avaliadosa campo. Uma primeira proposição realizada para aumentar a eficiência desse procedimento, baseado em dadosfenotípicos, foi a seleção auxiliada por marcadores (MAS) moleculares, a qual usa simultaneamente dadosfenotípicos e moleculares. Posteriormente, foi proposto um novo método de seleção denominado seleção genômicaampla (genome wide selection – GWS), o qual apresenta alta acurácia seletiva para a seleção, baseadaexclusivamente em marcadores, após terem seus efeitos genéticos estimados a partir de dados fenotípicos emuma amostra da população de seleção. A GWS é excelente para caracteres de baixa herdabilidade, ao contrário daMAS, que não é útil para caracteres de baixa herdabilidade. O presente trabalho tem como objetivos apresentara metodologia GWS e simular um caso de aplicação da mesma, visando enfatizar as suas vantagens sobre aMAS. Objetiva também demonstrar a relação entre o BLUP tradicional e o BLUP genômico associado à GWS.Adicionalmente, discute aspectos referentes ao tamanho amostral adequado para estimação dos efeitosgenotípicos dos marcadores. Os resultados revelam que a GWS poderá ter grande utilidade ao melhoramentogenético. No entanto, é preciso adquirir experiência prática com a GWS, visando inferir sobre sua efetividade.Embrapa Florestas2010-03-22info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63Pesquisa Florestal Brasileira; n. 56 (2008): jan./jun.; 63Pesquisa Florestal Brasileira; No. 56 (2008): jan./jun.; 631983-26051809-3647reponame:Pesquisa Florestal Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAporhttps://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63/65Resende, Marcos Deon Vilela deLopes, Paulo SávioSilva, Rogério Luíz daPires, Ismael Eleotérioinfo:eu-repo/semantics/openAccess2017-04-28T14:07:52Zoai:pfb.cnpf.embrapa.br/pfb:article/63Revistahttps://pfb.cnpf.embrapa.br/pfb/index.php/pfb/PUBhttps://pfb.cnpf.embrapa.br/pfb/index.php/pfb/oaipfb@embrapa.br || revista.pfb@gmail.com || patricia.mattos@embrapa.br1983-26051809-3647opendoar:2017-04-28T14:07:52Pesquisa Florestal Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genome wide selection (GWS) and maximization of the genetic improvement efficiency
Seleção genômica ampla (GWS) e maximização da eficiência do melhoramento genético
title Genome wide selection (GWS) and maximization of the genetic improvement efficiency
spellingShingle Genome wide selection (GWS) and maximization of the genetic improvement efficiency
Resende, Marcos Deon Vilela de
Genomic selection
linkage disequilibrium analysis
fine mapping
genetic markers.
Seleção genômica
análise de desequilíbrio de ligação
mapeamento fino
marcadores moleculares
title_short Genome wide selection (GWS) and maximization of the genetic improvement efficiency
title_full Genome wide selection (GWS) and maximization of the genetic improvement efficiency
title_fullStr Genome wide selection (GWS) and maximization of the genetic improvement efficiency
title_full_unstemmed Genome wide selection (GWS) and maximization of the genetic improvement efficiency
title_sort Genome wide selection (GWS) and maximization of the genetic improvement efficiency
author Resende, Marcos Deon Vilela de
author_facet Resende, Marcos Deon Vilela de
Lopes, Paulo Sávio
Silva, Rogério Luíz da
Pires, Ismael Eleotério
author_role author
author2 Lopes, Paulo Sávio
Silva, Rogério Luíz da
Pires, Ismael Eleotério
author2_role author
author
author
dc.contributor.author.fl_str_mv Resende, Marcos Deon Vilela de
Lopes, Paulo Sávio
Silva, Rogério Luíz da
Pires, Ismael Eleotério
dc.subject.por.fl_str_mv Genomic selection
linkage disequilibrium analysis
fine mapping
genetic markers.
Seleção genômica
análise de desequilíbrio de ligação
mapeamento fino
marcadores moleculares
topic Genomic selection
linkage disequilibrium analysis
fine mapping
genetic markers.
Seleção genômica
análise de desequilíbrio de ligação
mapeamento fino
marcadores moleculares
description Genetic selection has been practiced by the best linear unbiased prediction (BLUP) method using phenotypic records. A first proposal for enhancement of the efficiency of this procedure was the marker assisted selection (MAS). Later, another method called genome wide selection - GWS was reported, which presents high accuracy for the selection based exclusively on markers, after predicting their genetic effects from phenotypic data in a sample of the population of selection. GWS is excellent for low heritable traits, while MAS is not. This paper presents the GWS methodology and simulates a case of its application, aiming at emphasizing its advantages over MAS. The relation between traditional BLUP and genomic BLUP is also detailed as well as the sample size required for precise estimation of the genetic values of the markers. Results revealed that the GWS can be worthy for genetic improvement. Practical experience is much needed to infer about its effectiveness.
publishDate 2010
dc.date.none.fl_str_mv 2010-03-22
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63
url https://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://pfb.cnpf.embrapa.br/pfb/index.php/pfb/article/view/63/65
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Embrapa Florestas
publisher.none.fl_str_mv Embrapa Florestas
dc.source.none.fl_str_mv Pesquisa Florestal Brasileira; n. 56 (2008): jan./jun.; 63
Pesquisa Florestal Brasileira; No. 56 (2008): jan./jun.; 63
1983-2605
1809-3647
reponame:Pesquisa Florestal Brasileira (Online)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Pesquisa Florestal Brasileira (Online)
collection Pesquisa Florestal Brasileira (Online)
repository.name.fl_str_mv Pesquisa Florestal Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv pfb@embrapa.br || revista.pfb@gmail.com || patricia.mattos@embrapa.br
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