Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.

Detalhes bibliográficos
Autor(a) principal: LACERDA JÚNIOR, G. V.
Data de Publicação: 2019
Outros Autores: NORONHA, M. F., CABRAL, L., DELFORNO, T. P., SOUSA, S. T. P. de, FERNANDES JUNIOR, P. I., MELO, I. S., OLIVEIRA. V. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220
Resumo: Drylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems.
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spelling Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.Floresta secaBioma CaatingaFloresta seca tropicalComunidades microbianas do soloMetagenômicaSazonalidadeFloresta NativaFlorestaCaatingaSoloUso da TerraFloresta TropicalEcossistemaDry forestsDrylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems.Article 648.GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA.LACERDA JÚNIOR, G. V.NORONHA, M. F.CABRAL, L.DELFORNO, T. P.SOUSA, S. T. P. deFERNANDES JUNIOR, P. I.MELO, I. S.OLIVEIRA. V. M.2019-04-16T00:40:11Z2019-04-16T00:40:11Z2019-04-1520192019-12-02T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFrontiers in Microbiology, v. 10, abr. 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/110822010.3389/fmicb.2019.00648enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-04-16T00:40:18Zoai:www.alice.cnptia.embrapa.br:doc/1108220Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-04-16T00:40:18falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-04-16T00:40:18Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
spellingShingle Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
LACERDA JÚNIOR, G. V.
Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
title_short Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_full Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_fullStr Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_full_unstemmed Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_sort Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
author LACERDA JÚNIOR, G. V.
author_facet LACERDA JÚNIOR, G. V.
NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
author_role author
author2 NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA.
dc.contributor.author.fl_str_mv LACERDA JÚNIOR, G. V.
NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
dc.subject.por.fl_str_mv Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
topic Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
description Drylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems.
publishDate 2019
dc.date.none.fl_str_mv 2019-04-16T00:40:11Z
2019-04-16T00:40:11Z
2019-04-15
2019
2019-12-02T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Frontiers in Microbiology, v. 10, abr. 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220
10.3389/fmicb.2019.00648
identifier_str_mv Frontiers in Microbiology, v. 10, abr. 2019.
10.3389/fmicb.2019.00648
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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