Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.

Detalhes bibliográficos
Autor(a) principal: CARDOSO, A. A.
Data de Publicação: 2016
Outros Autores: ANDRAUS, M. de P., BORBA, T. C. de O., MARTIN-DIDONET, C. C. G., FERREIRA, E. P. de B.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672
Resumo: This study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments.
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spelling Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.Symbiotic efficiencyCarbon source useToleance to salinity and temperatureFeijãoPhaseolus vulgarisRhizobiumSimbioseThis study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments.ALINE ASSIS CARDOSO, UFG; MICHEL DE PAULA ANDRAUS, UFG; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; CLAUDIA CRISTINA GARCIA MARTIN-DIDONET, UNIVERSIDADE ESTADUAL DE GOIÁS, Anápolis-GO; ENDERSON PETRONIO DE BRITO FERREIRA, CNPAF.CARDOSO, A. A.ANDRAUS, M. de P.BORBA, T. C. de O.MARTIN-DIDONET, C. C. G.FERREIRA, E. P. de B.2020-11-03T09:21:25Z2020-11-03T09:21:25Z2016-12-142017info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017.1678-4405http://www.alice.cnptia.embrapa.br/alice/handle/doc/105867210.1016/j.bjm.2016.09.002enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-11-03T09:21:32Zoai:www.alice.cnptia.embrapa.br:doc/1058672Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-11-03T09:21:32falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-11-03T09:21:32Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
title Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
spellingShingle Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
CARDOSO, A. A.
Symbiotic efficiency
Carbon source use
Toleance to salinity and temperature
Feijão
Phaseolus vulgaris
Rhizobium
Simbiose
title_short Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
title_full Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
title_fullStr Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
title_full_unstemmed Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
title_sort Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
author CARDOSO, A. A.
author_facet CARDOSO, A. A.
ANDRAUS, M. de P.
BORBA, T. C. de O.
MARTIN-DIDONET, C. C. G.
FERREIRA, E. P. de B.
author_role author
author2 ANDRAUS, M. de P.
BORBA, T. C. de O.
MARTIN-DIDONET, C. C. G.
FERREIRA, E. P. de B.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv ALINE ASSIS CARDOSO, UFG; MICHEL DE PAULA ANDRAUS, UFG; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; CLAUDIA CRISTINA GARCIA MARTIN-DIDONET, UNIVERSIDADE ESTADUAL DE GOIÁS, Anápolis-GO; ENDERSON PETRONIO DE BRITO FERREIRA, CNPAF.
dc.contributor.author.fl_str_mv CARDOSO, A. A.
ANDRAUS, M. de P.
BORBA, T. C. de O.
MARTIN-DIDONET, C. C. G.
FERREIRA, E. P. de B.
dc.subject.por.fl_str_mv Symbiotic efficiency
Carbon source use
Toleance to salinity and temperature
Feijão
Phaseolus vulgaris
Rhizobium
Simbiose
topic Symbiotic efficiency
Carbon source use
Toleance to salinity and temperature
Feijão
Phaseolus vulgaris
Rhizobium
Simbiose
description This study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments.
publishDate 2016
dc.date.none.fl_str_mv 2016-12-14
2017
2020-11-03T09:21:25Z
2020-11-03T09:21:25Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Brazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017.
1678-4405
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672
10.1016/j.bjm.2016.09.002
identifier_str_mv Brazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017.
1678-4405
10.1016/j.bjm.2016.09.002
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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