Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672 |
Resumo: | This study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments. |
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Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.Symbiotic efficiencyCarbon source useToleance to salinity and temperatureFeijãoPhaseolus vulgarisRhizobiumSimbioseThis study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments.ALINE ASSIS CARDOSO, UFG; MICHEL DE PAULA ANDRAUS, UFG; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; CLAUDIA CRISTINA GARCIA MARTIN-DIDONET, UNIVERSIDADE ESTADUAL DE GOIÁS, Anápolis-GO; ENDERSON PETRONIO DE BRITO FERREIRA, CNPAF.CARDOSO, A. A.ANDRAUS, M. de P.BORBA, T. C. de O.MARTIN-DIDONET, C. C. G.FERREIRA, E. P. de B.2020-11-03T09:21:25Z2020-11-03T09:21:25Z2016-12-142017info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017.1678-4405http://www.alice.cnptia.embrapa.br/alice/handle/doc/105867210.1016/j.bjm.2016.09.002enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-11-03T09:21:32Zoai:www.alice.cnptia.embrapa.br:doc/1058672Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-11-03T09:21:32falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-11-03T09:21:32Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
title |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
spellingShingle |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. CARDOSO, A. A. Symbiotic efficiency Carbon source use Toleance to salinity and temperature Feijão Phaseolus vulgaris Rhizobium Simbiose |
title_short |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
title_full |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
title_fullStr |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
title_full_unstemmed |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
title_sort |
Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. |
author |
CARDOSO, A. A. |
author_facet |
CARDOSO, A. A. ANDRAUS, M. de P. BORBA, T. C. de O. MARTIN-DIDONET, C. C. G. FERREIRA, E. P. de B. |
author_role |
author |
author2 |
ANDRAUS, M. de P. BORBA, T. C. de O. MARTIN-DIDONET, C. C. G. FERREIRA, E. P. de B. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
ALINE ASSIS CARDOSO, UFG; MICHEL DE PAULA ANDRAUS, UFG; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; CLAUDIA CRISTINA GARCIA MARTIN-DIDONET, UNIVERSIDADE ESTADUAL DE GOIÁS, Anápolis-GO; ENDERSON PETRONIO DE BRITO FERREIRA, CNPAF. |
dc.contributor.author.fl_str_mv |
CARDOSO, A. A. ANDRAUS, M. de P. BORBA, T. C. de O. MARTIN-DIDONET, C. C. G. FERREIRA, E. P. de B. |
dc.subject.por.fl_str_mv |
Symbiotic efficiency Carbon source use Toleance to salinity and temperature Feijão Phaseolus vulgaris Rhizobium Simbiose |
topic |
Symbiotic efficiency Carbon source use Toleance to salinity and temperature Feijão Phaseolus vulgaris Rhizobium Simbiose |
description |
This study aimed to evaluate the tolerance to salinity and temperature, the genetic diversityand the symbiotic efficiency of rhizobia isolates obtained from wild genotypes of commonbean cultivated in soil samples from the States of Goiás, Minas Gerais and Paraná. The iso-lates were subjected to different NaCl concentrations (0%, 1%, 2%, 4% and 6%) at differenttemperatures (28◦C, 33◦C, 38◦C, 43◦C and 48◦C). Genotypic characterization was performedbased on BOX-PCR, REP-PCR markers and 16S rRNA sequencing. An evaluation of symbioticefficiency was carried out under greenhouse conditions in autoclaved Leonard jars. Among98 isolates about 45% of them and Rhizobium freirei PRF81 showed a high tolerance to tem-perature, while 24 isolates and Rhizobium tropici CIAT899 were able to use all of the carbonsources studied. Clustering analysis based on the ability to use carbon sources and on thetolerance to salinity and temperature grouped 49 isolates, R. tropici CIAT899 and R. tropiciH12 with a similarity level of 76%. Based on genotypic characterization, 65% of the isolatesshowed an approximately 66% similarity with R. tropici CIAT899 and R. tropici H12. About20% of the isolates showed symbiotic efficiency similar to or better than the best Rhizobiumreference strain (R. tropici CIAT899). Phylogenetic analysis of the 16S rRNA revealed that twoefficient isolates (ALSG5A1 and JPrG6A8) belong to the group of strains used as commercialinoculant for common bean in Brazil and must be assayed in field experiments. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-12-14 2017 2020-11-03T09:21:25Z 2020-11-03T09:21:25Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Brazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017. 1678-4405 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672 10.1016/j.bjm.2016.09.002 |
identifier_str_mv |
Brazilian Journal of Microbiology, São Paulo, v. 48, n. 1, p. 43-50, jan./mar. 2017. 1678-4405 10.1016/j.bjm.2016.09.002 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1058672 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503497067003904 |