The relationship between population structure and aluminum tolerance in cultivated sorghum.

Detalhes bibliográficos
Autor(a) principal: CANIATO, F. F.
Data de Publicação: 2011
Outros Autores: GUIMARAES, C. T., HAMBLIN, M., BILLOT, C., RAMI, J.-F., HUFNAGEL, B., KOCHIAN, L. V., LIU, J., GARCIA, A. A. F., HASH, C. T., RAMU, P., MITCHELL, S., KRESIVICH, S., OLIVEIRA, A. C. de, AVELLAR, G. de, BORÉM, A., GLASZMANN, J.-C., SCHAFFERT, R. E., MAGALHAES, J. V.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/894831
Resumo: Background: Acid soils comprise up to 50% of the world?s arable lands and in these areas aluminum (Al) toxicity impairs root growth, strongly limiting crop yield. Food security is thereby compromised in many developing countries located in tropical and subtropical regions worldwide. In sorghum, SbMATE, an Al-activated citrate transporter, underlies the AltSB locus on chromosome 3 and confers Al tolerance via Al-activated root citrate release. Methodology: Population structure was studied in 254 sorghum accessions representative of the diversity present in cultivated sorghums. Al tolerance was assessed as the degree of root growth inhibition in nutrient solution containing Al. A genetic analysis based on markers flanking AltSB and SbMATE expression was undertaken to assess a possible role for AltSB in Al tolerant accessions. In addition, the mode of gene action was estimated concerning the Al tolerance trait. Comparisons between models that include population structure were applied to assess the importance of each subpopulation to Al tolerance. Conclusion/Significance: Six subpopulations were revealed featuring specific racial and geographic origins. Al tolerance was found to be rather rare and present primarily in guinea and to lesser extent in caudatum subpopulations. AltSB was found to play a role in Al tolerance in most of the Al tolerant accessions. A striking variation was observed in the mode of gene action for the Al tolerance trait, which ranged from almost complete recessivity to near complete dominance, with a higher frequency of partially recessive sources of Al tolerance. A possible interpretation of our results concerning the origin and evolution of Al tolerance in cultivated sorghum is discussed. This study demonstrates the importance of deeply exploring the crop diversity reservoir both for a comprehensive view of the dynamics underlying the distribution and function of Al tolerance genes and to design efficient molecular breeding strategies aimed at enhancing Al tolerance.
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spelling The relationship between population structure and aluminum tolerance in cultivated sorghum.SorgoBackground: Acid soils comprise up to 50% of the world?s arable lands and in these areas aluminum (Al) toxicity impairs root growth, strongly limiting crop yield. Food security is thereby compromised in many developing countries located in tropical and subtropical regions worldwide. In sorghum, SbMATE, an Al-activated citrate transporter, underlies the AltSB locus on chromosome 3 and confers Al tolerance via Al-activated root citrate release. Methodology: Population structure was studied in 254 sorghum accessions representative of the diversity present in cultivated sorghums. Al tolerance was assessed as the degree of root growth inhibition in nutrient solution containing Al. A genetic analysis based on markers flanking AltSB and SbMATE expression was undertaken to assess a possible role for AltSB in Al tolerant accessions. In addition, the mode of gene action was estimated concerning the Al tolerance trait. Comparisons between models that include population structure were applied to assess the importance of each subpopulation to Al tolerance. Conclusion/Significance: Six subpopulations were revealed featuring specific racial and geographic origins. Al tolerance was found to be rather rare and present primarily in guinea and to lesser extent in caudatum subpopulations. AltSB was found to play a role in Al tolerance in most of the Al tolerant accessions. A striking variation was observed in the mode of gene action for the Al tolerance trait, which ranged from almost complete recessivity to near complete dominance, with a higher frequency of partially recessive sources of Al tolerance. A possible interpretation of our results concerning the origin and evolution of Al tolerance in cultivated sorghum is discussed. This study demonstrates the importance of deeply exploring the crop diversity reservoir both for a comprehensive view of the dynamics underlying the distribution and function of Al tolerance genes and to design efficient molecular breeding strategies aimed at enhancing Al tolerance.FERNANDA F. CANIATO, BOLSISTA; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; MARTHA HAMBLIN, CORNELL UNIVERSITY; CLAIRE BILLOT, CIRAD; JEAN-FRANÇOIS RAMI, CIRAD; BARBARA HUFNAGEL, UFMG; LEON V. KOCHIAN, CORNELL UNIVERSITY; JIPING LIU, CORNELL UNIVERSITY; ANTONIO AUGUSTO F. GARCIA, ESALQ; C. TOM HASH, ICRISAT; PUNNA RAMU, ICRISAT; SHARON MITCHELL, CORNELL UNIVERSITY; STEPHEN KRESOVICH, CORNELL UNIVERSITY; ANTONIO CARLOS DE OLIVEIRA, CNPMS; GISELA DE AVELLAR, Pesquisadora aposentada - CNPMS; ALUÍZO BORÉM, UFV; JEAN-CHRISTOPHE GLASZMANN, CIRAD; ROBERT EUGENE SCHAFFERT, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS.CANIATO, F. F.GUIMARAES, C. T.HAMBLIN, M.BILLOT, C.RAMI, J.-F.HUFNAGEL, B.KOCHIAN, L. V.LIU, J.GARCIA, A. A. F.HASH, C. T.RAMU, P.MITCHELL, S.KRESIVICH, S.OLIVEIRA, A. C. deAVELLAR, G. deBORÉM, A.GLASZMANN, J.-C.SCHAFFERT, R. E.MAGALHAES, J. V.2011-06-28T11:11:11Z2011-06-28T11:11:11Z2011-06-2820112018-05-28T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlos One, San Francisco, v. 6, n. 6, Jun. 2011.http://www.alice.cnptia.embrapa.br/alice/handle/doc/89483110.1371/journal.pone.0020830enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-15T22:17:03Zoai:www.alice.cnptia.embrapa.br:doc/894831Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-15T22:17:03falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-15T22:17:03Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv The relationship between population structure and aluminum tolerance in cultivated sorghum.
title The relationship between population structure and aluminum tolerance in cultivated sorghum.
spellingShingle The relationship between population structure and aluminum tolerance in cultivated sorghum.
CANIATO, F. F.
Sorgo
title_short The relationship between population structure and aluminum tolerance in cultivated sorghum.
title_full The relationship between population structure and aluminum tolerance in cultivated sorghum.
title_fullStr The relationship between population structure and aluminum tolerance in cultivated sorghum.
title_full_unstemmed The relationship between population structure and aluminum tolerance in cultivated sorghum.
title_sort The relationship between population structure and aluminum tolerance in cultivated sorghum.
author CANIATO, F. F.
author_facet CANIATO, F. F.
GUIMARAES, C. T.
HAMBLIN, M.
BILLOT, C.
RAMI, J.-F.
HUFNAGEL, B.
KOCHIAN, L. V.
LIU, J.
GARCIA, A. A. F.
HASH, C. T.
RAMU, P.
MITCHELL, S.
KRESIVICH, S.
OLIVEIRA, A. C. de
AVELLAR, G. de
BORÉM, A.
GLASZMANN, J.-C.
SCHAFFERT, R. E.
MAGALHAES, J. V.
author_role author
author2 GUIMARAES, C. T.
HAMBLIN, M.
BILLOT, C.
RAMI, J.-F.
HUFNAGEL, B.
KOCHIAN, L. V.
LIU, J.
GARCIA, A. A. F.
HASH, C. T.
RAMU, P.
MITCHELL, S.
KRESIVICH, S.
OLIVEIRA, A. C. de
AVELLAR, G. de
BORÉM, A.
GLASZMANN, J.-C.
SCHAFFERT, R. E.
MAGALHAES, J. V.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv FERNANDA F. CANIATO, BOLSISTA; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; MARTHA HAMBLIN, CORNELL UNIVERSITY; CLAIRE BILLOT, CIRAD; JEAN-FRANÇOIS RAMI, CIRAD; BARBARA HUFNAGEL, UFMG; LEON V. KOCHIAN, CORNELL UNIVERSITY; JIPING LIU, CORNELL UNIVERSITY; ANTONIO AUGUSTO F. GARCIA, ESALQ; C. TOM HASH, ICRISAT; PUNNA RAMU, ICRISAT; SHARON MITCHELL, CORNELL UNIVERSITY; STEPHEN KRESOVICH, CORNELL UNIVERSITY; ANTONIO CARLOS DE OLIVEIRA, CNPMS; GISELA DE AVELLAR, Pesquisadora aposentada - CNPMS; ALUÍZO BORÉM, UFV; JEAN-CHRISTOPHE GLASZMANN, CIRAD; ROBERT EUGENE SCHAFFERT, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS.
dc.contributor.author.fl_str_mv CANIATO, F. F.
GUIMARAES, C. T.
HAMBLIN, M.
BILLOT, C.
RAMI, J.-F.
HUFNAGEL, B.
KOCHIAN, L. V.
LIU, J.
GARCIA, A. A. F.
HASH, C. T.
RAMU, P.
MITCHELL, S.
KRESIVICH, S.
OLIVEIRA, A. C. de
AVELLAR, G. de
BORÉM, A.
GLASZMANN, J.-C.
SCHAFFERT, R. E.
MAGALHAES, J. V.
dc.subject.por.fl_str_mv Sorgo
topic Sorgo
description Background: Acid soils comprise up to 50% of the world?s arable lands and in these areas aluminum (Al) toxicity impairs root growth, strongly limiting crop yield. Food security is thereby compromised in many developing countries located in tropical and subtropical regions worldwide. In sorghum, SbMATE, an Al-activated citrate transporter, underlies the AltSB locus on chromosome 3 and confers Al tolerance via Al-activated root citrate release. Methodology: Population structure was studied in 254 sorghum accessions representative of the diversity present in cultivated sorghums. Al tolerance was assessed as the degree of root growth inhibition in nutrient solution containing Al. A genetic analysis based on markers flanking AltSB and SbMATE expression was undertaken to assess a possible role for AltSB in Al tolerant accessions. In addition, the mode of gene action was estimated concerning the Al tolerance trait. Comparisons between models that include population structure were applied to assess the importance of each subpopulation to Al tolerance. Conclusion/Significance: Six subpopulations were revealed featuring specific racial and geographic origins. Al tolerance was found to be rather rare and present primarily in guinea and to lesser extent in caudatum subpopulations. AltSB was found to play a role in Al tolerance in most of the Al tolerant accessions. A striking variation was observed in the mode of gene action for the Al tolerance trait, which ranged from almost complete recessivity to near complete dominance, with a higher frequency of partially recessive sources of Al tolerance. A possible interpretation of our results concerning the origin and evolution of Al tolerance in cultivated sorghum is discussed. This study demonstrates the importance of deeply exploring the crop diversity reservoir both for a comprehensive view of the dynamics underlying the distribution and function of Al tolerance genes and to design efficient molecular breeding strategies aimed at enhancing Al tolerance.
publishDate 2011
dc.date.none.fl_str_mv 2011-06-28T11:11:11Z
2011-06-28T11:11:11Z
2011-06-28
2011
2018-05-28T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Plos One, San Francisco, v. 6, n. 6, Jun. 2011.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/894831
10.1371/journal.pone.0020830
identifier_str_mv Plos One, San Francisco, v. 6, n. 6, Jun. 2011.
10.1371/journal.pone.0020830
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/894831
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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