Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.

Detalhes bibliográficos
Autor(a) principal: ZUCCHI, M. I.
Data de Publicação: 2003
Outros Autores: BRONDANI, R. P. V., PINHEIRO, J. B., CHAVES, L. J., COELHO, A. S. G., VENCOVSKY, R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1122034
https://doi.org/10.1590/S1415-47572003000400008
Resumo: The ''cagaita tree'' (Eugenia dysenterica) is a plant found widespread in the Brazilian Cerrado. Its fruit is used for popular consumption and for industrial purposes. This study opens a new perspective for the generation of population genetic data and parameters estimates for devising sound collection and conservation procedures for Eugenia dysenterica. A battery of 356 primer pairs developed for Eucalyptus spp. was tested on the ''cagaita tree''. Only 10 primer pairs were found to be transferable between the two species. Using a polyacrilamide gel, an average of 10.4 alleles per locus was detected, in a sample of 116 individuals from 10 natural ''cagaita tree'' populations. Seven polymorphic loci allowed estimation of genetic parameters, including expected average heterozygosity He = 0,442, among population diversity, RST = 0,268 and gene flow Nm = 0,680. Results indicated a potential of SSR locus transferability developed for Eucalyptus to other species of different genera, such as in the case of the ''cagaita tree''. The high genetic diversity among populations detected with SSR markers indicated that these markers are highly sensitive to detect population structure. Estimated Nm values and the existence of private alleles indicated reduced gene flow and consequently possible damage to the metapopulation structure.
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spelling Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.Genetic diversityTropical treeSSREugenia DysentericaCagaitaCerradoVariação GenéticaMarcador MolecularMyrtaceaeThe ''cagaita tree'' (Eugenia dysenterica) is a plant found widespread in the Brazilian Cerrado. Its fruit is used for popular consumption and for industrial purposes. This study opens a new perspective for the generation of population genetic data and parameters estimates for devising sound collection and conservation procedures for Eugenia dysenterica. A battery of 356 primer pairs developed for Eucalyptus spp. was tested on the ''cagaita tree''. Only 10 primer pairs were found to be transferable between the two species. Using a polyacrilamide gel, an average of 10.4 alleles per locus was detected, in a sample of 116 individuals from 10 natural ''cagaita tree'' populations. Seven polymorphic loci allowed estimation of genetic parameters, including expected average heterozygosity He = 0,442, among population diversity, RST = 0,268 and gene flow Nm = 0,680. Results indicated a potential of SSR locus transferability developed for Eucalyptus to other species of different genera, such as in the case of the ''cagaita tree''. The high genetic diversity among populations detected with SSR markers indicated that these markers are highly sensitive to detect population structure. Estimated Nm values and the existence of private alleles indicated reduced gene flow and consequently possible damage to the metapopulation structure.MARIA IMACULADA ZUCCHI, ESALQ; ROSANA PEREIRA VIANELLO, CNPAF; JOSE BALDIN PINHEIRO, UFG; LAZARO JOSE CHAVES, UFG; ALEXANDRE SIQUEIRA GUEDES COELHO, UFG; ROLAND VENCOVSKY, ESALQ.ZUCCHI, M. I.BRONDANI, R. P. V.PINHEIRO, J. B.CHAVES, L. J.COELHO, A. S. G.VENCOVSKY, R.2020-05-05T04:39:47Z2020-05-05T04:39:47Z2020-05-042003info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Biology, v. 26, n. 4, p. 449-457, dez. 2003.1678-4685http://www.alice.cnptia.embrapa.br/alice/handle/doc/1122034https://doi.org/10.1590/S1415-47572003000400008enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-05-05T04:39:54Zoai:www.alice.cnptia.embrapa.br:doc/1122034Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-05-05T04:39:54falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-05-05T04:39:54Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
title Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
spellingShingle Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
ZUCCHI, M. I.
Genetic diversity
Tropical tree
SSR
Eugenia Dysenterica
Cagaita
Cerrado
Variação Genética
Marcador Molecular
Myrtaceae
title_short Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
title_full Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
title_fullStr Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
title_full_unstemmed Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
title_sort Genetic structure and gene flow in Eugenia dysenterica DC in the Brazilian Cerrado utilizing SSR markers.
author ZUCCHI, M. I.
author_facet ZUCCHI, M. I.
BRONDANI, R. P. V.
PINHEIRO, J. B.
CHAVES, L. J.
COELHO, A. S. G.
VENCOVSKY, R.
author_role author
author2 BRONDANI, R. P. V.
PINHEIRO, J. B.
CHAVES, L. J.
COELHO, A. S. G.
VENCOVSKY, R.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv MARIA IMACULADA ZUCCHI, ESALQ; ROSANA PEREIRA VIANELLO, CNPAF; JOSE BALDIN PINHEIRO, UFG; LAZARO JOSE CHAVES, UFG; ALEXANDRE SIQUEIRA GUEDES COELHO, UFG; ROLAND VENCOVSKY, ESALQ.
dc.contributor.author.fl_str_mv ZUCCHI, M. I.
BRONDANI, R. P. V.
PINHEIRO, J. B.
CHAVES, L. J.
COELHO, A. S. G.
VENCOVSKY, R.
dc.subject.por.fl_str_mv Genetic diversity
Tropical tree
SSR
Eugenia Dysenterica
Cagaita
Cerrado
Variação Genética
Marcador Molecular
Myrtaceae
topic Genetic diversity
Tropical tree
SSR
Eugenia Dysenterica
Cagaita
Cerrado
Variação Genética
Marcador Molecular
Myrtaceae
description The ''cagaita tree'' (Eugenia dysenterica) is a plant found widespread in the Brazilian Cerrado. Its fruit is used for popular consumption and for industrial purposes. This study opens a new perspective for the generation of population genetic data and parameters estimates for devising sound collection and conservation procedures for Eugenia dysenterica. A battery of 356 primer pairs developed for Eucalyptus spp. was tested on the ''cagaita tree''. Only 10 primer pairs were found to be transferable between the two species. Using a polyacrilamide gel, an average of 10.4 alleles per locus was detected, in a sample of 116 individuals from 10 natural ''cagaita tree'' populations. Seven polymorphic loci allowed estimation of genetic parameters, including expected average heterozygosity He = 0,442, among population diversity, RST = 0,268 and gene flow Nm = 0,680. Results indicated a potential of SSR locus transferability developed for Eucalyptus to other species of different genera, such as in the case of the ''cagaita tree''. The high genetic diversity among populations detected with SSR markers indicated that these markers are highly sensitive to detect population structure. Estimated Nm values and the existence of private alleles indicated reduced gene flow and consequently possible damage to the metapopulation structure.
publishDate 2003
dc.date.none.fl_str_mv 2003
2020-05-05T04:39:47Z
2020-05-05T04:39:47Z
2020-05-04
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Biology, v. 26, n. 4, p. 449-457, dez. 2003.
1678-4685
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1122034
https://doi.org/10.1590/S1415-47572003000400008
identifier_str_mv Genetics and Molecular Biology, v. 26, n. 4, p. 449-457, dez. 2003.
1678-4685
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1122034
https://doi.org/10.1590/S1415-47572003000400008
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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