Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.

Detalhes bibliográficos
Autor(a) principal: SANTOS, F. C. dos
Data de Publicação: 2017
Outros Autores: PEIXOTO, M. G. C. D., FONSECA, P. A. de S., PIRES, M. de F. A., VENTURA, R. V., ROSSE, I. da C., BRUNELI, F. A. T., MACHADO, M. A., CARVALHO, M. R. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1072217
Resumo: Temperament is fundamental to animal production due to its direct influence on the animal-herdsman relationship. When compared to calm animals, the aggressive, anxious or fearful ones exhibit less weight gain, lower reproductive efficiency, decreased milk production and higher herd maintenance costs, all of which contribute to reduced profits. However, temperament is a trait that is complex and difficult to assess. Recently, a new quantitative system, REATEST®, for assessing reactivity, a phenotype of temperament, was developed. Herein, we describe the results of a Genome-wide association study for reactivity, assessed using REATEST® with a sample of 754 females from five dual-purpose (milk and meat production) Guzerat (Bos indicus) herds. Genotyping was performed using a 50k SNP chip and a two-step mixed model approach (Grammar-Gamma) with a one-by-one marker regression was used to identify QTLs. QTLs for reactivity were identified on chromosomes BTA1, BTA5, BTA14, and BTA25. Five intronic and two intergenic markers were significantly associated with reactivity. POU1F1, DRD3, VWA3A, ZBTB20, EPHA6, SNRPF and NTN4 were identified as candidate genes. Previous QTL reports for temperament traits, covering areas surrounding the SNPs/genes identified here, further corroborate these associations. The seven genes identified in the present study explain 20.5% of reactivity variance and give a better understanding of temperament biology.
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spelling Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.Temperament traits in cowsTemperament biologyCattle temperamentTemperament is fundamental to animal production due to its direct influence on the animal-herdsman relationship. When compared to calm animals, the aggressive, anxious or fearful ones exhibit less weight gain, lower reproductive efficiency, decreased milk production and higher herd maintenance costs, all of which contribute to reduced profits. However, temperament is a trait that is complex and difficult to assess. Recently, a new quantitative system, REATEST®, for assessing reactivity, a phenotype of temperament, was developed. Herein, we describe the results of a Genome-wide association study for reactivity, assessed using REATEST® with a sample of 754 females from five dual-purpose (milk and meat production) Guzerat (Bos indicus) herds. Genotyping was performed using a 50k SNP chip and a two-step mixed model approach (Grammar-Gamma) with a one-by-one marker regression was used to identify QTLs. QTLs for reactivity were identified on chromosomes BTA1, BTA5, BTA14, and BTA25. Five intronic and two intergenic markers were significantly associated with reactivity. POU1F1, DRD3, VWA3A, ZBTB20, EPHA6, SNRPF and NTN4 were identified as candidate genes. Previous QTL reports for temperament traits, covering areas surrounding the SNPs/genes identified here, further corroborate these associations. The seven genes identified in the present study explain 20.5% of reactivity variance and give a better understanding of temperament biology.Fernanda Caroline dos Santos, UFMG; MARIA GABRIELA CAMPOLINA D PEIXOTO, CNPGL; Pablo Augusto de Souza Fonseca, UFMG; MARIA DE FATIMA AVILA PIRES, CNPGL; Ricardo Vieira Ventura, Center for Genetic Improvement of Livestock, University of Guelph, Guelph, Canada; Izinara da Cruz Rosse, UFMG; FRANK ANGELO TOMITA BRUNELI, CNPGL; MARCO ANTONIO MACHADO, CNPGL; Maria Raquel Santos Carvalho, UFMG.SANTOS, F. C. dosPEIXOTO, M. G. C. D.FONSECA, P. A. de S.PIRES, M. de F. A.VENTURA, R. V.ROSSE, I. da C.BRUNELI, F. A. T.MACHADO, M. A.CARVALHO, M. R. S.2017-07-07T11:11:11Z2017-07-07T11:11:11Z2017-07-0720172017-07-07T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article15 p.PLoS ONE, v. 12, n. 1, 2017.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1072217enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T04:34:58Zoai:www.alice.cnptia.embrapa.br:doc/1072217Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T04:34:58falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T04:34:58Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
title Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
spellingShingle Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
SANTOS, F. C. dos
Temperament traits in cows
Temperament biology
Cattle temperament
title_short Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
title_full Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
title_fullStr Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
title_full_unstemmed Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
title_sort Identification of candidate genes for reactivity in Guzerat (Bos indicus) cattle: a genome-wide association study.
author SANTOS, F. C. dos
author_facet SANTOS, F. C. dos
PEIXOTO, M. G. C. D.
FONSECA, P. A. de S.
PIRES, M. de F. A.
VENTURA, R. V.
ROSSE, I. da C.
BRUNELI, F. A. T.
MACHADO, M. A.
CARVALHO, M. R. S.
author_role author
author2 PEIXOTO, M. G. C. D.
FONSECA, P. A. de S.
PIRES, M. de F. A.
VENTURA, R. V.
ROSSE, I. da C.
BRUNELI, F. A. T.
MACHADO, M. A.
CARVALHO, M. R. S.
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Fernanda Caroline dos Santos, UFMG; MARIA GABRIELA CAMPOLINA D PEIXOTO, CNPGL; Pablo Augusto de Souza Fonseca, UFMG; MARIA DE FATIMA AVILA PIRES, CNPGL; Ricardo Vieira Ventura, Center for Genetic Improvement of Livestock, University of Guelph, Guelph, Canada; Izinara da Cruz Rosse, UFMG; FRANK ANGELO TOMITA BRUNELI, CNPGL; MARCO ANTONIO MACHADO, CNPGL; Maria Raquel Santos Carvalho, UFMG.
dc.contributor.author.fl_str_mv SANTOS, F. C. dos
PEIXOTO, M. G. C. D.
FONSECA, P. A. de S.
PIRES, M. de F. A.
VENTURA, R. V.
ROSSE, I. da C.
BRUNELI, F. A. T.
MACHADO, M. A.
CARVALHO, M. R. S.
dc.subject.por.fl_str_mv Temperament traits in cows
Temperament biology
Cattle temperament
topic Temperament traits in cows
Temperament biology
Cattle temperament
description Temperament is fundamental to animal production due to its direct influence on the animal-herdsman relationship. When compared to calm animals, the aggressive, anxious or fearful ones exhibit less weight gain, lower reproductive efficiency, decreased milk production and higher herd maintenance costs, all of which contribute to reduced profits. However, temperament is a trait that is complex and difficult to assess. Recently, a new quantitative system, REATEST®, for assessing reactivity, a phenotype of temperament, was developed. Herein, we describe the results of a Genome-wide association study for reactivity, assessed using REATEST® with a sample of 754 females from five dual-purpose (milk and meat production) Guzerat (Bos indicus) herds. Genotyping was performed using a 50k SNP chip and a two-step mixed model approach (Grammar-Gamma) with a one-by-one marker regression was used to identify QTLs. QTLs for reactivity were identified on chromosomes BTA1, BTA5, BTA14, and BTA25. Five intronic and two intergenic markers were significantly associated with reactivity. POU1F1, DRD3, VWA3A, ZBTB20, EPHA6, SNRPF and NTN4 were identified as candidate genes. Previous QTL reports for temperament traits, covering areas surrounding the SNPs/genes identified here, further corroborate these associations. The seven genes identified in the present study explain 20.5% of reactivity variance and give a better understanding of temperament biology.
publishDate 2017
dc.date.none.fl_str_mv 2017-07-07T11:11:11Z
2017-07-07T11:11:11Z
2017-07-07
2017
2017-07-07T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv PLoS ONE, v. 12, n. 1, 2017.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1072217
identifier_str_mv PLoS ONE, v. 12, n. 1, 2017.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1072217
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 15 p.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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