Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought.
Autor(a) principal: | |
---|---|
Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1148001 https:// doi.org/10.3390/plants11202786 |
Resumo: | Drought and salinity are two of the most severe abiotic stresses affecting agriculture worldwide and bear some similarities regarding the responses of plants to them. The first is also known as osmotic stress and shows similarities mainly with the osmotic effect, the first phase of salinity stress. Multi-Omics Integration (MOI) offers a new opportunity for the non-trivial challenge of unraveling the mechanisms behind multigenic traits, such as drought and salinity resistance. The current study carried out a comprehensive, large-scale, single-omics analysis (SOA) and MOI studies on the leaves of young oil palm plants submitted to water deprivation. After performing SOA, 1955 DE enzymes from transcriptomics analysis, 131 DE enzymes from proteomics analysis, and 269 DE metabolites underwent MOI analysis, revealing several pathways affected by this stress, with at least one DE molecule in all three omics platforms used. Moreover, the similarities and dissimilarities in the molecular response of those plants to those two abiotic stresses underwent mapping. Cysteine and methionine metabolism (map00270) was the most affected pathway in all scenarios evaluated. The correlation analysis revealed that 91.55% of those enzymes expressed under both stresses had similar qualitative profiles, corroborating the already known fact that plant responses to drought and salinity show several similarities. At last, the results shed light on some candidate genes for engineering crop species resilient to both abiotic stresses. |
id |
EMBR_609877b48054598cc82e8c88ecf18c11 |
---|---|
oai_identifier_str |
oai:www.alice.cnptia.embrapa.br:doc/1148001 |
network_acronym_str |
EMBR |
network_name_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository_id_str |
2154 |
spelling |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought.African oil palmIntegratomicsTranscriptomicsProteomicsMetabolomicsAbiotic stressDrought and salinity are two of the most severe abiotic stresses affecting agriculture worldwide and bear some similarities regarding the responses of plants to them. The first is also known as osmotic stress and shows similarities mainly with the osmotic effect, the first phase of salinity stress. Multi-Omics Integration (MOI) offers a new opportunity for the non-trivial challenge of unraveling the mechanisms behind multigenic traits, such as drought and salinity resistance. The current study carried out a comprehensive, large-scale, single-omics analysis (SOA) and MOI studies on the leaves of young oil palm plants submitted to water deprivation. After performing SOA, 1955 DE enzymes from transcriptomics analysis, 131 DE enzymes from proteomics analysis, and 269 DE metabolites underwent MOI analysis, revealing several pathways affected by this stress, with at least one DE molecule in all three omics platforms used. Moreover, the similarities and dissimilarities in the molecular response of those plants to those two abiotic stresses underwent mapping. Cysteine and methionine metabolism (map00270) was the most affected pathway in all scenarios evaluated. The correlation analysis revealed that 91.55% of those enzymes expressed under both stresses had similar qualitative profiles, corroborating the already known fact that plant responses to drought and salinity show several similarities. At last, the results shed light on some candidate genes for engineering crop species resilient to both abiotic stresses.ANDRE PEREIRA LEAO, CNPAE; CLEITON BARROSO BITTENCOURT, Universidade Federal de Lavras; THALLITON LUIZ CARVALHO DA SILVA, Universidade Federal de Lavras; JORGE CÂNDIDO RODRIGUES NETO; ÍTALO DE OLIVEIRA BRAGA, Universidade Federal de Lavras; LETÍCIA RIOS VIEIRA, Universidade Federal de Lavras; JOSE ANTONIO DE AQUINO RIBEIRO, CNPAE; CARLOS ANTONIO FERREIRA DE SOUSA, CPAMN; PATRICIA VERARDI ABDELNUR, CNPAE; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE.LEAO, A. P.BITTENCOURT, C. B.SILVA, T. L. C. daRODRIGUES NETO, J. C.BRAGA, I. de O.VIEIRA, L. R.RIBEIRO, J. A. de A.SOUSA, C. A. F. deABDELNUR, P. V.SOUZA JUNIOR, M. T.2022-11-03T18:08:19Z2022-11-03T18:08:19Z2022-11-032022info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlants, 11, n. 2786, 2022.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1148001https:// doi.org/10.3390/plants11202786enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2022-11-03T18:08:28Zoai:www.alice.cnptia.embrapa.br:doc/1148001Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542022-11-03T18:08:28falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542022-11-03T18:08:28Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
title |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
spellingShingle |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. LEAO, A. P. African oil palm Integratomics Transcriptomics Proteomics Metabolomics Abiotic stress |
title_short |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
title_full |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
title_fullStr |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
title_full_unstemmed |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
title_sort |
Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. |
author |
LEAO, A. P. |
author_facet |
LEAO, A. P. BITTENCOURT, C. B. SILVA, T. L. C. da RODRIGUES NETO, J. C. BRAGA, I. de O. VIEIRA, L. R. RIBEIRO, J. A. de A. SOUSA, C. A. F. de ABDELNUR, P. V. SOUZA JUNIOR, M. T. |
author_role |
author |
author2 |
BITTENCOURT, C. B. SILVA, T. L. C. da RODRIGUES NETO, J. C. BRAGA, I. de O. VIEIRA, L. R. RIBEIRO, J. A. de A. SOUSA, C. A. F. de ABDELNUR, P. V. SOUZA JUNIOR, M. T. |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
ANDRE PEREIRA LEAO, CNPAE; CLEITON BARROSO BITTENCOURT, Universidade Federal de Lavras; THALLITON LUIZ CARVALHO DA SILVA, Universidade Federal de Lavras; JORGE CÂNDIDO RODRIGUES NETO; ÍTALO DE OLIVEIRA BRAGA, Universidade Federal de Lavras; LETÍCIA RIOS VIEIRA, Universidade Federal de Lavras; JOSE ANTONIO DE AQUINO RIBEIRO, CNPAE; CARLOS ANTONIO FERREIRA DE SOUSA, CPAMN; PATRICIA VERARDI ABDELNUR, CNPAE; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE. |
dc.contributor.author.fl_str_mv |
LEAO, A. P. BITTENCOURT, C. B. SILVA, T. L. C. da RODRIGUES NETO, J. C. BRAGA, I. de O. VIEIRA, L. R. RIBEIRO, J. A. de A. SOUSA, C. A. F. de ABDELNUR, P. V. SOUZA JUNIOR, M. T. |
dc.subject.por.fl_str_mv |
African oil palm Integratomics Transcriptomics Proteomics Metabolomics Abiotic stress |
topic |
African oil palm Integratomics Transcriptomics Proteomics Metabolomics Abiotic stress |
description |
Drought and salinity are two of the most severe abiotic stresses affecting agriculture worldwide and bear some similarities regarding the responses of plants to them. The first is also known as osmotic stress and shows similarities mainly with the osmotic effect, the first phase of salinity stress. Multi-Omics Integration (MOI) offers a new opportunity for the non-trivial challenge of unraveling the mechanisms behind multigenic traits, such as drought and salinity resistance. The current study carried out a comprehensive, large-scale, single-omics analysis (SOA) and MOI studies on the leaves of young oil palm plants submitted to water deprivation. After performing SOA, 1955 DE enzymes from transcriptomics analysis, 131 DE enzymes from proteomics analysis, and 269 DE metabolites underwent MOI analysis, revealing several pathways affected by this stress, with at least one DE molecule in all three omics platforms used. Moreover, the similarities and dissimilarities in the molecular response of those plants to those two abiotic stresses underwent mapping. Cysteine and methionine metabolism (map00270) was the most affected pathway in all scenarios evaluated. The correlation analysis revealed that 91.55% of those enzymes expressed under both stresses had similar qualitative profiles, corroborating the already known fact that plant responses to drought and salinity show several similarities. At last, the results shed light on some candidate genes for engineering crop species resilient to both abiotic stresses. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-11-03T18:08:19Z 2022-11-03T18:08:19Z 2022-11-03 2022 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Plants, 11, n. 2786, 2022. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1148001 https:// doi.org/10.3390/plants11202786 |
identifier_str_mv |
Plants, 11, n. 2786, 2022. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1148001 https:// doi.org/10.3390/plants11202786 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
_version_ |
1794503533759823872 |