The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.

Detalhes bibliográficos
Autor(a) principal: CONRADO, A. C.
Data de Publicação: 2017
Outros Autores: ARRUDA, H., STANTON, D. W. S., JAMES, S. W., KILLE, P., BROWN, G. G., SILVA, E. da, DUPONT, E., TAHERI, S., MORGAN, A. J., SIMÕES, N., RODRIGUES, A., MONTIEL, R., CUNHA, L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1076456
Resumo: Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies, in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG), 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms, but unusual among invertebrates it has several overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3, which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A, 28.1% T, 14.6% G, and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053.
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spelling The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.AçoresRhinodrilidaePeregrine speciesEarthwormMinhocaMitocôndriaGenomaPontoscolex corethrurusMitochondrial genomeMitochondriaAzoresPontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies, in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG), 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms, but unusual among invertebrates it has several overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3, which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A, 28.1% T, 14.6% G, and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053.Publicado na PeerJ Preprints em 3 mar. 2017.Ana C. Conrado, UFPR; Hugo Arruda, Departamento de Biologia, Universidade dos Açores, Ponta Delgada, Portugal; David W.G. Stanton, Cardiff School of Biosciences, Cardiff University, Museum Avenue; Samuel W. James, University of Management, Sustainable Living Dept., Fairfield; Peter Kille, Cardiff School of Biosciences, Cardiff University, Museum Avenue; GEORGE GARDNER BROWN, CNPF; Elodie da Silva, Bolsista da Embrapa Florestas; Lise Dupont, Université Paris Est Créteil, Institut d’écologie et des sciences; Shabnam Taheri, Université Paris Est Créteil, Institut d’écologie et des sciences; Andrew J. Morgan, Cardiff School of Biosciences, Cardiff University, Museum Avenue; Nelson Simões, Departamento de Biologia, Universidade dos Açores, Ponta Delgada, Portugal; Universidade dos Açores, Ponta Delgada, Portugal. (CVARG); Rafael Montiel, Laboratorio Nacional de Genómica para la Biodiversidad, Unidad de Genómica Avanzada, México; Luis Cunha, Bolsista da Embrapa Florestas.CONRADO, A. C.ARRUDA, H.STANTON, D. W. S.JAMES, S. W.KILLE, P.BROWN, G. G.SILVA, E. daDUPONT, E.TAHERI, S.MORGAN, A. J.SIMÕES, N.RODRIGUES, A.MONTIEL, R.CUNHA, L.2017-09-30T10:26:30Z2017-09-30T10:26:30Z2017-09-2820172017-12-21T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article13 p.ZooKeys, v. 688, Aug. 2017.http://www.alice.cnptia.embrapa.br/alice/handle/doc/107645610.3897/zookeys.688.13721.suppl1enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-09-30T10:26:41Zoai:www.alice.cnptia.embrapa.br:doc/1076456Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-09-30T10:26:41falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-09-30T10:26:41Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
title The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
spellingShingle The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
CONRADO, A. C.
Açores
Rhinodrilidae
Peregrine species
Earthworm
Minhoca
Mitocôndria
Genoma
Pontoscolex corethrurus
Mitochondrial genome
Mitochondria
Azores
title_short The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
title_full The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
title_fullStr The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
title_full_unstemmed The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
title_sort The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): mitogenome characterization and phylogenetic positioning.
author CONRADO, A. C.
author_facet CONRADO, A. C.
ARRUDA, H.
STANTON, D. W. S.
JAMES, S. W.
KILLE, P.
BROWN, G. G.
SILVA, E. da
DUPONT, E.
TAHERI, S.
MORGAN, A. J.
SIMÕES, N.
RODRIGUES, A.
MONTIEL, R.
CUNHA, L.
author_role author
author2 ARRUDA, H.
STANTON, D. W. S.
JAMES, S. W.
KILLE, P.
BROWN, G. G.
SILVA, E. da
DUPONT, E.
TAHERI, S.
MORGAN, A. J.
SIMÕES, N.
RODRIGUES, A.
MONTIEL, R.
CUNHA, L.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Ana C. Conrado, UFPR; Hugo Arruda, Departamento de Biologia, Universidade dos Açores, Ponta Delgada, Portugal; David W.G. Stanton, Cardiff School of Biosciences, Cardiff University, Museum Avenue; Samuel W. James, University of Management, Sustainable Living Dept., Fairfield; Peter Kille, Cardiff School of Biosciences, Cardiff University, Museum Avenue; GEORGE GARDNER BROWN, CNPF; Elodie da Silva, Bolsista da Embrapa Florestas; Lise Dupont, Université Paris Est Créteil, Institut d’écologie et des sciences; Shabnam Taheri, Université Paris Est Créteil, Institut d’écologie et des sciences; Andrew J. Morgan, Cardiff School of Biosciences, Cardiff University, Museum Avenue; Nelson Simões, Departamento de Biologia, Universidade dos Açores, Ponta Delgada, Portugal; Universidade dos Açores, Ponta Delgada, Portugal. (CVARG); Rafael Montiel, Laboratorio Nacional de Genómica para la Biodiversidad, Unidad de Genómica Avanzada, México; Luis Cunha, Bolsista da Embrapa Florestas.
dc.contributor.author.fl_str_mv CONRADO, A. C.
ARRUDA, H.
STANTON, D. W. S.
JAMES, S. W.
KILLE, P.
BROWN, G. G.
SILVA, E. da
DUPONT, E.
TAHERI, S.
MORGAN, A. J.
SIMÕES, N.
RODRIGUES, A.
MONTIEL, R.
CUNHA, L.
dc.subject.por.fl_str_mv Açores
Rhinodrilidae
Peregrine species
Earthworm
Minhoca
Mitocôndria
Genoma
Pontoscolex corethrurus
Mitochondrial genome
Mitochondria
Azores
topic Açores
Rhinodrilidae
Peregrine species
Earthworm
Minhoca
Mitocôndria
Genoma
Pontoscolex corethrurus
Mitochondrial genome
Mitochondria
Azores
description Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies, in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG), 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms, but unusual among invertebrates it has several overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3, which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A, 28.1% T, 14.6% G, and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053.
publishDate 2017
dc.date.none.fl_str_mv 2017-09-30T10:26:30Z
2017-09-30T10:26:30Z
2017-09-28
2017
2017-12-21T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv ZooKeys, v. 688, Aug. 2017.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1076456
10.3897/zookeys.688.13721.suppl1
identifier_str_mv ZooKeys, v. 688, Aug. 2017.
10.3897/zookeys.688.13721.suppl1
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1076456
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 13 p.
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instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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