Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models.
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1133535 http://dx.doi.org/10.4238/gmr18691 |
Resumo: | Knowledge of lactation curves in dairy cattle is essential for understanding the animal production in milk production systems. Genomic prediction of lactation curves represents the genetic pattern of milk production of the animals in the herd. In this context, we made genomic predictions of lactation curves through genome-wide selection (GWS) to characterize the genetic pattern of lactation traits in Girolando cattle based on parameters estimated by nonlinear mixed effects (NLME) models. Data of 1,822 milk control records from 226 Girolando animals genotyped for 37,673 single nucleotide polymorphisms were analyzed. Nine NLME models were compared to identify the equation with the best fit. The lactation traits estimated by the best model were submitted to GWS analysis, using the Bayesian LASSO method. Then, based on the genomic estimated breeding values (GEBVs) obtained, genomic predictions of lactation curves were constructed, and the genetic parameters were calculated. Wood's equation showed the best fit among the evaluated models. Heritabilities ranged from 0.09 to 0.29 for the seven lactation variables (initial production, rates of increase and decline, lactation peak, time to peak yield, persistence and total production). The correlations among GEBVs ranged from -0.85 to 0.98. The concordances between the best animals selected according to the selected traits were greater when the correlations between GEBVs for these traits were also high. Consequently, the methodology allowed us to identify the best nonlinear model and to construct the genetic lactation curves of a Girolando cattle population, as well as to assess the differences between animals and the association between lactation variables. |
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Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models.Previsão genômicaBovinoGado LeiteiroCurva de LactaçãoHeritabilityGenomeGirolandoKnowledge of lactation curves in dairy cattle is essential for understanding the animal production in milk production systems. Genomic prediction of lactation curves represents the genetic pattern of milk production of the animals in the herd. In this context, we made genomic predictions of lactation curves through genome-wide selection (GWS) to characterize the genetic pattern of lactation traits in Girolando cattle based on parameters estimated by nonlinear mixed effects (NLME) models. Data of 1,822 milk control records from 226 Girolando animals genotyped for 37,673 single nucleotide polymorphisms were analyzed. Nine NLME models were compared to identify the equation with the best fit. The lactation traits estimated by the best model were submitted to GWS analysis, using the Bayesian LASSO method. Then, based on the genomic estimated breeding values (GEBVs) obtained, genomic predictions of lactation curves were constructed, and the genetic parameters were calculated. Wood's equation showed the best fit among the evaluated models. Heritabilities ranged from 0.09 to 0.29 for the seven lactation variables (initial production, rates of increase and decline, lactation peak, time to peak yield, persistence and total production). The correlations among GEBVs ranged from -0.85 to 0.98. The concordances between the best animals selected according to the selected traits were greater when the correlations between GEBVs for these traits were also high. Consequently, the methodology allowed us to identify the best nonlinear model and to construct the genetic lactation curves of a Girolando cattle population, as well as to assess the differences between animals and the association between lactation variables.Universidade Federal do Piauí; Universidade Federal de Viçosa; Universidade Federal de Viçosa; Universidade Federal de Viçosa; Universidade Federal de Viçosa; A.C.C. NASCIMENTO, Universidade Federal de Viçosa; Universidade Federal de Viçosa; D.B.D. MARQUES, Universidade Federal de Viçosa; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; A.P.S. CARNEIRO, Universidade Federal de Viçosa; Universidade de São Paulo.TEIXEIRA, F. R. F.NASCIMENTO, M.CECON, P. R.CRUZ, C. D.SILVA, F. F. eNASCIMENTO, A. C. C.AZEVEDO, C. F.MARQUES, D. B. D.SILVA, M. V. G. B.CARNEIRO, A. P. S.PAIXAO, D. M.2021-08-13T17:00:23Z2021-08-13T17:00:23Z2021-08-132021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 20, n. 1, gmr18691, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1133535http://dx.doi.org/10.4238/gmr18691enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2021-08-13T17:00:32Zoai:www.alice.cnptia.embrapa.br:doc/1133535Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542021-08-13T17:00:32Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
title |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
spellingShingle |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. TEIXEIRA, F. R. F. Previsão genômica Bovino Gado Leiteiro Curva de Lactação Heritability Genome Girolando |
title_short |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
title_full |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
title_fullStr |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
title_full_unstemmed |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
title_sort |
Genomic prediction of lactation curves of Girolando cattle based on nonlinear mixed models. |
author |
TEIXEIRA, F. R. F. |
author_facet |
TEIXEIRA, F. R. F. NASCIMENTO, M. CECON, P. R. CRUZ, C. D. SILVA, F. F. e NASCIMENTO, A. C. C. AZEVEDO, C. F. MARQUES, D. B. D. SILVA, M. V. G. B. CARNEIRO, A. P. S. PAIXAO, D. M. |
author_role |
author |
author2 |
NASCIMENTO, M. CECON, P. R. CRUZ, C. D. SILVA, F. F. e NASCIMENTO, A. C. C. AZEVEDO, C. F. MARQUES, D. B. D. SILVA, M. V. G. B. CARNEIRO, A. P. S. PAIXAO, D. M. |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do Piauí; Universidade Federal de Viçosa; Universidade Federal de Viçosa; Universidade Federal de Viçosa; Universidade Federal de Viçosa; A.C.C. NASCIMENTO, Universidade Federal de Viçosa; Universidade Federal de Viçosa; D.B.D. MARQUES, Universidade Federal de Viçosa; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; A.P.S. CARNEIRO, Universidade Federal de Viçosa; Universidade de São Paulo. |
dc.contributor.author.fl_str_mv |
TEIXEIRA, F. R. F. NASCIMENTO, M. CECON, P. R. CRUZ, C. D. SILVA, F. F. e NASCIMENTO, A. C. C. AZEVEDO, C. F. MARQUES, D. B. D. SILVA, M. V. G. B. CARNEIRO, A. P. S. PAIXAO, D. M. |
dc.subject.por.fl_str_mv |
Previsão genômica Bovino Gado Leiteiro Curva de Lactação Heritability Genome Girolando |
topic |
Previsão genômica Bovino Gado Leiteiro Curva de Lactação Heritability Genome Girolando |
description |
Knowledge of lactation curves in dairy cattle is essential for understanding the animal production in milk production systems. Genomic prediction of lactation curves represents the genetic pattern of milk production of the animals in the herd. In this context, we made genomic predictions of lactation curves through genome-wide selection (GWS) to characterize the genetic pattern of lactation traits in Girolando cattle based on parameters estimated by nonlinear mixed effects (NLME) models. Data of 1,822 milk control records from 226 Girolando animals genotyped for 37,673 single nucleotide polymorphisms were analyzed. Nine NLME models were compared to identify the equation with the best fit. The lactation traits estimated by the best model were submitted to GWS analysis, using the Bayesian LASSO method. Then, based on the genomic estimated breeding values (GEBVs) obtained, genomic predictions of lactation curves were constructed, and the genetic parameters were calculated. Wood's equation showed the best fit among the evaluated models. Heritabilities ranged from 0.09 to 0.29 for the seven lactation variables (initial production, rates of increase and decline, lactation peak, time to peak yield, persistence and total production). The correlations among GEBVs ranged from -0.85 to 0.98. The concordances between the best animals selected according to the selected traits were greater when the correlations between GEBVs for these traits were also high. Consequently, the methodology allowed us to identify the best nonlinear model and to construct the genetic lactation curves of a Girolando cattle population, as well as to assess the differences between animals and the association between lactation variables. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-08-13T17:00:23Z 2021-08-13T17:00:23Z 2021-08-13 2021 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Research, v. 20, n. 1, gmr18691, 2021. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1133535 http://dx.doi.org/10.4238/gmr18691 |
identifier_str_mv |
Genetics and Molecular Research, v. 20, n. 1, gmr18691, 2021. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1133535 http://dx.doi.org/10.4238/gmr18691 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1817695615172214784 |