Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.

Detalhes bibliográficos
Autor(a) principal: FERREIRA, C. F.
Data de Publicação: 2019
Outros Autores: GUTIERREZ, D. L., KREUZE, J. F., ISKRA-CARUANA, M. L., CHABANNES, M., BARBOSA, A. C. O., SANTOS, T. A., SILVA, A. G. S., SANTOS, R. M. F., AMORIM, E. P., OLIVEIRA, S. A. S. de, JESUS, O. N. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1112332
Resumo: Plant DNA and RNA extraction methods are well established, with a wide range of protocols, depending on the purposes of each laboratory/research. Nowadays, quick, inexpensive and easy plant DNA and RNA extraction methods are highly sought after. We developed an optimized protocol for plant DNA and RNA extraction that uses an inexpensive bench drill and plastic bags and does not require liquid nitrogen. DNA from leaves and RNA from leaves and roots of banana, pineapple, citrus, papaya, passion fruit and cassava, were extracted using a basic cetyltrimethylammonium bromide method. Both nucleic acids were quantified and evaluated for quality based on agarose gel electrophoresis. The DNA and RNA extractions were successful for all species, and RNA quality in pellets was maintained after storage at room temperature for three weeks. This protocol can reduce costs considerably in laboratories with ongoing routine activities of DNA and RNA extraction for genetic diversity and gene expression analyses, where other conventional methods have not been successful due to explant, condition of samples and quantity and quality of nucleic acids. This is especially relevant for many laboratories in developing countries where the cost and availability of liquid nitrogen may be a constraint.
id EMBR_76dc259d80209e04e3cd436e43b53029
oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/1112332
network_acronym_str EMBR
network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository_id_str 2154
spelling Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.Melhoramento VegetalBreeding and Genetic ImprovementPlant DNA and RNA extraction methods are well established, with a wide range of protocols, depending on the purposes of each laboratory/research. Nowadays, quick, inexpensive and easy plant DNA and RNA extraction methods are highly sought after. We developed an optimized protocol for plant DNA and RNA extraction that uses an inexpensive bench drill and plastic bags and does not require liquid nitrogen. DNA from leaves and RNA from leaves and roots of banana, pineapple, citrus, papaya, passion fruit and cassava, were extracted using a basic cetyltrimethylammonium bromide method. Both nucleic acids were quantified and evaluated for quality based on agarose gel electrophoresis. The DNA and RNA extractions were successful for all species, and RNA quality in pellets was maintained after storage at room temperature for three weeks. This protocol can reduce costs considerably in laboratories with ongoing routine activities of DNA and RNA extraction for genetic diversity and gene expression analyses, where other conventional methods have not been successful due to explant, condition of samples and quantity and quality of nucleic acids. This is especially relevant for many laboratories in developing countries where the cost and availability of liquid nitrogen may be a constraint.gmr18394CLAUDIA FORTES FERREIRA, CNPMF; D. L. GUTIERREZ, INIA; J. F. KREUZE, CIP; M. L. ISKRA-CARUANA, CIRAD; M. CHABANNES, CIRAD; A. C. O. BARBOSA, UFRB; T. A. SANTOS, UFRB; A. G. S. SILVA, UFRB; R.M.F. SANTOS, UEFS; EDSON PERITO AMORIM, CNPMF; SAULO ALVES SANTOS DE OLIVEIRA, CNPMF; ONILDO NUNES DE JESUS, CNPMF.FERREIRA, C. F.GUTIERREZ, D. L.KREUZE, J. F.ISKRA-CARUANA, M. L.CHABANNES, M.BARBOSA, A. C. O.SANTOS, T. A.SILVA, A. G. S.SANTOS, R. M. F.AMORIM, E. P.OLIVEIRA, S. A. S. deJESUS, O. N. de2019-12-07T00:33:34Z2019-12-07T00:33:34Z2019-09-1920192019-12-07T00:33:34Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 18, n.3, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1112332enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-12-07T00:33:45Zoai:www.alice.cnptia.embrapa.br:doc/1112332Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-12-07T00:33:45falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-12-07T00:33:45Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
title Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
spellingShingle Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
FERREIRA, C. F.
Melhoramento Vegetal
Breeding and Genetic Improvement
title_short Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
title_full Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
title_fullStr Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
title_full_unstemmed Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
title_sort Rapid plant DNA and RNA extraction protocol using a bench drill Brief Note.
author FERREIRA, C. F.
author_facet FERREIRA, C. F.
GUTIERREZ, D. L.
KREUZE, J. F.
ISKRA-CARUANA, M. L.
CHABANNES, M.
BARBOSA, A. C. O.
SANTOS, T. A.
SILVA, A. G. S.
SANTOS, R. M. F.
AMORIM, E. P.
OLIVEIRA, S. A. S. de
JESUS, O. N. de
author_role author
author2 GUTIERREZ, D. L.
KREUZE, J. F.
ISKRA-CARUANA, M. L.
CHABANNES, M.
BARBOSA, A. C. O.
SANTOS, T. A.
SILVA, A. G. S.
SANTOS, R. M. F.
AMORIM, E. P.
OLIVEIRA, S. A. S. de
JESUS, O. N. de
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv CLAUDIA FORTES FERREIRA, CNPMF; D. L. GUTIERREZ, INIA; J. F. KREUZE, CIP; M. L. ISKRA-CARUANA, CIRAD; M. CHABANNES, CIRAD; A. C. O. BARBOSA, UFRB; T. A. SANTOS, UFRB; A. G. S. SILVA, UFRB; R.M.F. SANTOS, UEFS; EDSON PERITO AMORIM, CNPMF; SAULO ALVES SANTOS DE OLIVEIRA, CNPMF; ONILDO NUNES DE JESUS, CNPMF.
dc.contributor.author.fl_str_mv FERREIRA, C. F.
GUTIERREZ, D. L.
KREUZE, J. F.
ISKRA-CARUANA, M. L.
CHABANNES, M.
BARBOSA, A. C. O.
SANTOS, T. A.
SILVA, A. G. S.
SANTOS, R. M. F.
AMORIM, E. P.
OLIVEIRA, S. A. S. de
JESUS, O. N. de
dc.subject.por.fl_str_mv Melhoramento Vegetal
Breeding and Genetic Improvement
topic Melhoramento Vegetal
Breeding and Genetic Improvement
description Plant DNA and RNA extraction methods are well established, with a wide range of protocols, depending on the purposes of each laboratory/research. Nowadays, quick, inexpensive and easy plant DNA and RNA extraction methods are highly sought after. We developed an optimized protocol for plant DNA and RNA extraction that uses an inexpensive bench drill and plastic bags and does not require liquid nitrogen. DNA from leaves and RNA from leaves and roots of banana, pineapple, citrus, papaya, passion fruit and cassava, were extracted using a basic cetyltrimethylammonium bromide method. Both nucleic acids were quantified and evaluated for quality based on agarose gel electrophoresis. The DNA and RNA extractions were successful for all species, and RNA quality in pellets was maintained after storage at room temperature for three weeks. This protocol can reduce costs considerably in laboratories with ongoing routine activities of DNA and RNA extraction for genetic diversity and gene expression analyses, where other conventional methods have not been successful due to explant, condition of samples and quantity and quality of nucleic acids. This is especially relevant for many laboratories in developing countries where the cost and availability of liquid nitrogen may be a constraint.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-07T00:33:34Z
2019-12-07T00:33:34Z
2019-09-19
2019
2019-12-07T00:33:34Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 18, n.3, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1112332
identifier_str_mv Genetics and Molecular Research, v. 18, n.3, 2019.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1112332
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503485452976128