Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.

Detalhes bibliográficos
Autor(a) principal: CARVALHO, G. A. B. de
Data de Publicação: 2013
Outros Autores: BATISTA, J. S. S., MARCELINO-GUIMARÃES, F. C., NASCIMENTO, L. C. do, HUNGRIA, M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/957083
Resumo: Biological nitrogen fixation in root nodules is a process of great importance to crops of soybean [Glycine max (L.) Merr.], as it may provide the bulk of the plant?s needs for nitrogen. Legume nodulation involves several complex steps and, although studied for many decades, much remains to be understood. Results: This research aimed at analyzing the global expression of genes in soybean roots of a Brazilian cultivar (Conquista) inoculated with Bradyrhizobium japonicum CPAC 15, a strain broadly used in commercial inoculants in Brazil. To achieve this, we used the suppressive subtractive hybridization (SSH) technique combined with Illumina sequencing. The subtractive library (non-inoculated x inoculated) of soybean roots resulted in 3,210 differentially expressed transcripts at 10 days after inoculation were studied. The data were grouped according to the ontologies of the molecular functions and biological processes. Several classes of genes were confirmed as related to N2 fixation and others were reported for the first time. During nodule formation, a higher percentage of genes were related to primary metabolism, cell-wall modifications and the antioxidant defense system. Putative symbiotic functions were attributed to some of these genes for the first time.
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spelling Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.Nodulação - sojaBiological nitrogen fixation in root nodules is a process of great importance to crops of soybean [Glycine max (L.) Merr.], as it may provide the bulk of the plant?s needs for nitrogen. Legume nodulation involves several complex steps and, although studied for many decades, much remains to be understood. Results: This research aimed at analyzing the global expression of genes in soybean roots of a Brazilian cultivar (Conquista) inoculated with Bradyrhizobium japonicum CPAC 15, a strain broadly used in commercial inoculants in Brazil. To achieve this, we used the suppressive subtractive hybridization (SSH) technique combined with Illumina sequencing. The subtractive library (non-inoculated x inoculated) of soybean roots resulted in 3,210 differentially expressed transcripts at 10 days after inoculation were studied. The data were grouped according to the ontologies of the molecular functions and biological processes. Several classes of genes were confirmed as related to N2 fixation and others were reported for the first time. During nodule formation, a higher percentage of genes were related to primary metabolism, cell-wall modifications and the antioxidant defense system. Putative symbiotic functions were attributed to some of these genes for the first time.GESIELE ALMEIDA BARROS DE CARVALHO; JESIANE S. S. BATISTA; FRANCISMAR CORREA MARCELINO-GUIMARÃES, CNPSO; LEANDRO COSTA DO NASCIMENTO; MARIANGELA HUNGRIA DA CUNHA, CNPSO.CARVALHO, G. A. B. deBATISTA, J. S. S.MARCELINO-GUIMARÃES, F. C.NASCIMENTO, L. C. doHUNGRIA, M.2013-05-03T11:11:11Z2013-05-03T11:11:11Z2013-05-0320132014-03-11T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article11 p.BMC Genomics, v. 14, n. 153, 2013.1471-2164http://www.alice.cnptia.embrapa.br/alice/handle/doc/95708310.1186/1471-2164-14-153enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:01:14Zoai:www.alice.cnptia.embrapa.br:doc/957083Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:01:14falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:01:14Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
title Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
spellingShingle Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
CARVALHO, G. A. B. de
Nodulação - soja
title_short Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
title_full Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
title_fullStr Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
title_full_unstemmed Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
title_sort Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.
author CARVALHO, G. A. B. de
author_facet CARVALHO, G. A. B. de
BATISTA, J. S. S.
MARCELINO-GUIMARÃES, F. C.
NASCIMENTO, L. C. do
HUNGRIA, M.
author_role author
author2 BATISTA, J. S. S.
MARCELINO-GUIMARÃES, F. C.
NASCIMENTO, L. C. do
HUNGRIA, M.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv GESIELE ALMEIDA BARROS DE CARVALHO; JESIANE S. S. BATISTA; FRANCISMAR CORREA MARCELINO-GUIMARÃES, CNPSO; LEANDRO COSTA DO NASCIMENTO; MARIANGELA HUNGRIA DA CUNHA, CNPSO.
dc.contributor.author.fl_str_mv CARVALHO, G. A. B. de
BATISTA, J. S. S.
MARCELINO-GUIMARÃES, F. C.
NASCIMENTO, L. C. do
HUNGRIA, M.
dc.subject.por.fl_str_mv Nodulação - soja
topic Nodulação - soja
description Biological nitrogen fixation in root nodules is a process of great importance to crops of soybean [Glycine max (L.) Merr.], as it may provide the bulk of the plant?s needs for nitrogen. Legume nodulation involves several complex steps and, although studied for many decades, much remains to be understood. Results: This research aimed at analyzing the global expression of genes in soybean roots of a Brazilian cultivar (Conquista) inoculated with Bradyrhizobium japonicum CPAC 15, a strain broadly used in commercial inoculants in Brazil. To achieve this, we used the suppressive subtractive hybridization (SSH) technique combined with Illumina sequencing. The subtractive library (non-inoculated x inoculated) of soybean roots resulted in 3,210 differentially expressed transcripts at 10 days after inoculation were studied. The data were grouped according to the ontologies of the molecular functions and biological processes. Several classes of genes were confirmed as related to N2 fixation and others were reported for the first time. During nodule formation, a higher percentage of genes were related to primary metabolism, cell-wall modifications and the antioxidant defense system. Putative symbiotic functions were attributed to some of these genes for the first time.
publishDate 2013
dc.date.none.fl_str_mv 2013-05-03T11:11:11Z
2013-05-03T11:11:11Z
2013-05-03
2013
2014-03-11T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv BMC Genomics, v. 14, n. 153, 2013.
1471-2164
http://www.alice.cnptia.embrapa.br/alice/handle/doc/957083
10.1186/1471-2164-14-153
identifier_str_mv BMC Genomics, v. 14, n. 153, 2013.
1471-2164
10.1186/1471-2164-14-153
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/957083
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 11 p.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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repository.mail.fl_str_mv cg-riaa@embrapa.br
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