Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.

Detalhes bibliográficos
Autor(a) principal: ABREU, F. R. M.
Data de Publicação: 2016
Outros Autores: DEUS, K. E. de, PEREIRA, W. J., SILVEIRA, R. D. D., VIANELLO, R. P., BRONDANI, C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1054691
Resumo: The identification and validation of candidate genes related to traits of interest is a time consuming and expensive process and the homology among genes from different species can facilitate the identification of genes of the target species from the genomic information of a model species. This study aimed to quantify the expression of homologous rice genes previously related to drought tolerance in Arabidopsis. Five genes (CPK6, PLDa, GluR2, CesA8, and EIN2) were identified in rice by the homology of the amino acid sequence between rice and Arabidopsis. The genotypes Douradão (drought tolerant) and Primavera (drought susceptible) were subjected to a water deficit experiment, and subsequently evaluated for gene expression by qPCR for the five homologous and Lsi1 genes. The qPCR analysis clearly showed that the five homologous genes were expressed in rice, which is an indication that these genes could preserve their function in rice as a response to drought. In Douradão, of the five homologous genes, all but OsGluR2 displayed an increase in the average expression in drought treatment when compared to the control, while in Primavera, the average expression of the five genes did not differ between the control and drought treatment. In Douradão, the OsPLDa1, which showed the higher expression level in drought in relation to the control (10.82), significantly increased the gene expression in the leaf and root tissues as a response to drought, in both vegetative and reproductive stages, whereas in Primavera, this gene was suppressed in both tissues and stages under drought. Therefore, the OsPLDa1 gene was the most important in relation to drought response and is an interesting candidate for further studies in developing rice cultivars that are more tolerant to this stress.
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spelling Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.Gene homologyArrozOryza sativaAcido abscisicoRendimentoRiceAbscisic acidQuantitative polymerase chain reactionYieldsArabidopsisThe identification and validation of candidate genes related to traits of interest is a time consuming and expensive process and the homology among genes from different species can facilitate the identification of genes of the target species from the genomic information of a model species. This study aimed to quantify the expression of homologous rice genes previously related to drought tolerance in Arabidopsis. Five genes (CPK6, PLDa, GluR2, CesA8, and EIN2) were identified in rice by the homology of the amino acid sequence between rice and Arabidopsis. The genotypes Douradão (drought tolerant) and Primavera (drought susceptible) were subjected to a water deficit experiment, and subsequently evaluated for gene expression by qPCR for the five homologous and Lsi1 genes. The qPCR analysis clearly showed that the five homologous genes were expressed in rice, which is an indication that these genes could preserve their function in rice as a response to drought. In Douradão, of the five homologous genes, all but OsGluR2 displayed an increase in the average expression in drought treatment when compared to the control, while in Primavera, the average expression of the five genes did not differ between the control and drought treatment. In Douradão, the OsPLDa1, which showed the higher expression level in drought in relation to the control (10.82), significantly increased the gene expression in the leaf and root tissues as a response to drought, in both vegetative and reproductive stages, whereas in Primavera, this gene was suppressed in both tissues and stages under drought. Therefore, the OsPLDa1 gene was the most important in relation to drought response and is an interesting candidate for further studies in developing rice cultivars that are more tolerant to this stress.FERNANDA RAQUEL MARTINS ABREU, UNIVERSIDADE FEDERAL DE GOIÁS; KARINE EVARISTO DE DEUS, UNIVERSIDADE FEDERAL DE GOIÁS; WENDELL JACINTO PEREIRA, UNIVERSIDADE FEDERAL DE GOIÁS; RICARDO DIOGENES DIAS SILVEIRA; ROSANA PEREIRA VIANELLO, CNPAF; CLAUDIO BRONDANI, CNPAF.ABREU, F. R. M.DEUS, K. E. dePEREIRA, W. J.SILVEIRA, R. D. D.VIANELLO, R. P.BRONDANI, C.2016-10-14T11:11:11Z2016-10-14T11:11:11Z2016-10-1420162017-03-03T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAustralian Journal of Crop Science, v. 10, n. 9, p. 1266-1271, 2016.1835-2707http://www.alice.cnptia.embrapa.br/alice/handle/doc/1054691enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:49:26Zoai:www.alice.cnptia.embrapa.br:doc/1054691Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:49:26falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:49:26Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
title Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
spellingShingle Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
ABREU, F. R. M.
Gene homology
Arroz
Oryza sativa
Acido abscisico
Rendimento
Rice
Abscisic acid
Quantitative polymerase chain reaction
Yields
Arabidopsis
title_short Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
title_full Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
title_fullStr Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
title_full_unstemmed Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
title_sort Expression of rice genes homologous of Arabidopsis genes previously related to drought tolerance.
author ABREU, F. R. M.
author_facet ABREU, F. R. M.
DEUS, K. E. de
PEREIRA, W. J.
SILVEIRA, R. D. D.
VIANELLO, R. P.
BRONDANI, C.
author_role author
author2 DEUS, K. E. de
PEREIRA, W. J.
SILVEIRA, R. D. D.
VIANELLO, R. P.
BRONDANI, C.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv FERNANDA RAQUEL MARTINS ABREU, UNIVERSIDADE FEDERAL DE GOIÁS; KARINE EVARISTO DE DEUS, UNIVERSIDADE FEDERAL DE GOIÁS; WENDELL JACINTO PEREIRA, UNIVERSIDADE FEDERAL DE GOIÁS; RICARDO DIOGENES DIAS SILVEIRA; ROSANA PEREIRA VIANELLO, CNPAF; CLAUDIO BRONDANI, CNPAF.
dc.contributor.author.fl_str_mv ABREU, F. R. M.
DEUS, K. E. de
PEREIRA, W. J.
SILVEIRA, R. D. D.
VIANELLO, R. P.
BRONDANI, C.
dc.subject.por.fl_str_mv Gene homology
Arroz
Oryza sativa
Acido abscisico
Rendimento
Rice
Abscisic acid
Quantitative polymerase chain reaction
Yields
Arabidopsis
topic Gene homology
Arroz
Oryza sativa
Acido abscisico
Rendimento
Rice
Abscisic acid
Quantitative polymerase chain reaction
Yields
Arabidopsis
description The identification and validation of candidate genes related to traits of interest is a time consuming and expensive process and the homology among genes from different species can facilitate the identification of genes of the target species from the genomic information of a model species. This study aimed to quantify the expression of homologous rice genes previously related to drought tolerance in Arabidopsis. Five genes (CPK6, PLDa, GluR2, CesA8, and EIN2) were identified in rice by the homology of the amino acid sequence between rice and Arabidopsis. The genotypes Douradão (drought tolerant) and Primavera (drought susceptible) were subjected to a water deficit experiment, and subsequently evaluated for gene expression by qPCR for the five homologous and Lsi1 genes. The qPCR analysis clearly showed that the five homologous genes were expressed in rice, which is an indication that these genes could preserve their function in rice as a response to drought. In Douradão, of the five homologous genes, all but OsGluR2 displayed an increase in the average expression in drought treatment when compared to the control, while in Primavera, the average expression of the five genes did not differ between the control and drought treatment. In Douradão, the OsPLDa1, which showed the higher expression level in drought in relation to the control (10.82), significantly increased the gene expression in the leaf and root tissues as a response to drought, in both vegetative and reproductive stages, whereas in Primavera, this gene was suppressed in both tissues and stages under drought. Therefore, the OsPLDa1 gene was the most important in relation to drought response and is an interesting candidate for further studies in developing rice cultivars that are more tolerant to this stress.
publishDate 2016
dc.date.none.fl_str_mv 2016-10-14T11:11:11Z
2016-10-14T11:11:11Z
2016-10-14
2016
2017-03-03T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Australian Journal of Crop Science, v. 10, n. 9, p. 1266-1271, 2016.
1835-2707
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1054691
identifier_str_mv Australian Journal of Crop Science, v. 10, n. 9, p. 1266-1271, 2016.
1835-2707
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1054691
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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