Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.

Detalhes bibliográficos
Autor(a) principal: SOUZA, S. G. H. de
Data de Publicação: 2021
Outros Autores: SANTOS, T. B. dos, DOMINGUES, D. S., BERNADAC, A., BOUZAYEN, M., PEREIRA, L. F. P., DEGRASSI, G., CARPENTIERI-PIPOLO, V.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1137126
Resumo: Members of the ERF Family of Transcription Factors play an important role in plant development and gene expression that regulates responses to biotic and abiotic stress. This work identified 36 ERF family genes in Coffea arabica within the AP2/ERF full domain, using the EST-based genomic resource of the Brazilian Coffee Genome Project. The ERF family genes were classified into nine of the ten existing groups through phylogenetic analysis of the deduced amino acid sequences and comparison with the sequences of the ERF family genes in Arabidopsis. In addition to the AP2 domain, other conserved domains were identified, typical of members of each group. The in silico analysis and expression profiling showed high levels of expression for libraries derived from tissues of fruits, leaves and flowers as well as for libraries subjected to water stress. These results suggest the participation of the ERF family genes of C. arabica in distinct biological functions, such as control of development, maturation, and responses to water stress. The results of this work imply in the selection of promising genes for further functional characterizations that will provide a better understanding of the complex regulatory networks related to plant development and responses to stress, opening up opportunities for coffee breeding programs.
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spelling Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.AP2/ERFCoffeeEthyleneTranscription factorsMembers of the ERF Family of Transcription Factors play an important role in plant development and gene expression that regulates responses to biotic and abiotic stress. This work identified 36 ERF family genes in Coffea arabica within the AP2/ERF full domain, using the EST-based genomic resource of the Brazilian Coffee Genome Project. The ERF family genes were classified into nine of the ten existing groups through phylogenetic analysis of the deduced amino acid sequences and comparison with the sequences of the ERF family genes in Arabidopsis. In addition to the AP2 domain, other conserved domains were identified, typical of members of each group. The in silico analysis and expression profiling showed high levels of expression for libraries derived from tissues of fruits, leaves and flowers as well as for libraries subjected to water stress. These results suggest the participation of the ERF family genes of C. arabica in distinct biological functions, such as control of development, maturation, and responses to water stress. The results of this work imply in the selection of promising genes for further functional characterizations that will provide a better understanding of the complex regulatory networks related to plant development and responses to stress, opening up opportunities for coffee breeding programs.SILVIA GRACIELE HÜLSE DE SOUZA, Laboratory of Molecular Biology, Universidade Paranaense PO box 87502-210, Umuarama, PR, BrazilTIAGO B. DOS SANTOS, Instituto Agronômico do Paraná, Laboratório de Biotecnologia Vegetal, CP 481, PO box 86001-970, Londrina, PR, BrazilDOUGLAS S. DOMINGUES, Department of Botany, Instituto de Biociências, Universidade Estadual Paulista, UNESP, Rio Claro, SP, BrazilANNE BERNADAC, Laboratoire de Genomique et Biotechnologie des Fruits, UMR 990 INRA/INP-ENSAT Chemin de Borderouge, PO box 107, 31326 Castanet Tolosan Cedex, FranceMONDHER BOUZAYEN, Laboratoire de Genomique et Biotechnologie des Fruits, UMR 990 INRA/INP-ENSAT Chemin de Borderouge, PO box 107, 31326 Castanet Tolosan Cedex, FranceLUIZ FILIPE PROTASIO PEREIRA, CNPCaGIULIANO DEGRASSI, International Centre for Genetic Engineering and Biotechnology (ICGEB), 1Industrial Biotechnology Group, Buenos Aires, República ArgentinaVALERIA CARPENTIERI PIPOLO, CNPT.SOUZA, S. G. H. deSANTOS, T. B. dosDOMINGUES, D. S.BERNADAC, A.BOUZAYEN, M.PEREIRA, L. F. P.DEGRASSI, G.CARPENTIERI-PIPOLO, V.2021-12-06T14:00:25Z2021-12-06T14:00:25Z2021-12-062021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleJournal of Botanical Research, v. 3, n.1, Jan. 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1137126enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2021-12-06T14:00:37Zoai:www.alice.cnptia.embrapa.br:doc/1137126Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542021-12-06T14:00:37falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542021-12-06T14:00:37Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
title Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
spellingShingle Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
SOUZA, S. G. H. de
AP2/ERF
Coffee
Ethylene
Transcription factors
title_short Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
title_full Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
title_fullStr Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
title_full_unstemmed Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
title_sort Identification, Structure Analyses and Expression Pattern of the ERF Transcription Factor Family in Coffea arabica.
author SOUZA, S. G. H. de
author_facet SOUZA, S. G. H. de
SANTOS, T. B. dos
DOMINGUES, D. S.
BERNADAC, A.
BOUZAYEN, M.
PEREIRA, L. F. P.
DEGRASSI, G.
CARPENTIERI-PIPOLO, V.
author_role author
author2 SANTOS, T. B. dos
DOMINGUES, D. S.
BERNADAC, A.
BOUZAYEN, M.
PEREIRA, L. F. P.
DEGRASSI, G.
CARPENTIERI-PIPOLO, V.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv SILVIA GRACIELE HÜLSE DE SOUZA, Laboratory of Molecular Biology, Universidade Paranaense PO box 87502-210, Umuarama, PR, Brazil
TIAGO B. DOS SANTOS, Instituto Agronômico do Paraná, Laboratório de Biotecnologia Vegetal, CP 481, PO box 86001-970, Londrina, PR, Brazil
DOUGLAS S. DOMINGUES, Department of Botany, Instituto de Biociências, Universidade Estadual Paulista, UNESP, Rio Claro, SP, Brazil
ANNE BERNADAC, Laboratoire de Genomique et Biotechnologie des Fruits, UMR 990 INRA/INP-ENSAT Chemin de Borderouge, PO box 107, 31326 Castanet Tolosan Cedex, France
MONDHER BOUZAYEN, Laboratoire de Genomique et Biotechnologie des Fruits, UMR 990 INRA/INP-ENSAT Chemin de Borderouge, PO box 107, 31326 Castanet Tolosan Cedex, France
LUIZ FILIPE PROTASIO PEREIRA, CNPCa
GIULIANO DEGRASSI, International Centre for Genetic Engineering and Biotechnology (ICGEB), 1Industrial Biotechnology Group, Buenos Aires, República Argentina
VALERIA CARPENTIERI PIPOLO, CNPT.
dc.contributor.author.fl_str_mv SOUZA, S. G. H. de
SANTOS, T. B. dos
DOMINGUES, D. S.
BERNADAC, A.
BOUZAYEN, M.
PEREIRA, L. F. P.
DEGRASSI, G.
CARPENTIERI-PIPOLO, V.
dc.subject.por.fl_str_mv AP2/ERF
Coffee
Ethylene
Transcription factors
topic AP2/ERF
Coffee
Ethylene
Transcription factors
description Members of the ERF Family of Transcription Factors play an important role in plant development and gene expression that regulates responses to biotic and abiotic stress. This work identified 36 ERF family genes in Coffea arabica within the AP2/ERF full domain, using the EST-based genomic resource of the Brazilian Coffee Genome Project. The ERF family genes were classified into nine of the ten existing groups through phylogenetic analysis of the deduced amino acid sequences and comparison with the sequences of the ERF family genes in Arabidopsis. In addition to the AP2 domain, other conserved domains were identified, typical of members of each group. The in silico analysis and expression profiling showed high levels of expression for libraries derived from tissues of fruits, leaves and flowers as well as for libraries subjected to water stress. These results suggest the participation of the ERF family genes of C. arabica in distinct biological functions, such as control of development, maturation, and responses to water stress. The results of this work imply in the selection of promising genes for further functional characterizations that will provide a better understanding of the complex regulatory networks related to plant development and responses to stress, opening up opportunities for coffee breeding programs.
publishDate 2021
dc.date.none.fl_str_mv 2021-12-06T14:00:25Z
2021-12-06T14:00:25Z
2021-12-06
2021
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Journal of Botanical Research, v. 3, n.1, Jan. 2021.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1137126
identifier_str_mv Journal of Botanical Research, v. 3, n.1, Jan. 2021.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1137126
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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