Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.

Detalhes bibliográficos
Autor(a) principal: HENDERSON, G.
Data de Publicação: 2015
Outros Autores: COX, F., GANESH, S., JONKER, A., YOUNG, W., GLOBAL RUMEN CENSUS COLLABORATORS, JANSSEN, P. H.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035993
Resumo: Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.
id EMBR_a2670fd722d0e68fa3238c2ade486301
oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/1035993
network_acronym_str EMBR
network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository_id_str 2154
spelling Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.Ruminant digestionMetabolism of ruminantRuminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.Gemma Henderson, AgResearch Limited, New Zealand; Faith Cox, AgResearch Limited, New Zealand; Siva Ganesh, AgResearch Limited, New Zealand; Arjan Jonker, AgResearch Limited, New Zealand; Wayne Young, AgResearch Limited, New Zealand; Global Rumen Census Collaborators; Peter H. Janssen, AgResearch Limited, New Zealand.HENDERSON, G.COX, F.GANESH, S.JONKER, A.YOUNG, W.GLOBAL RUMEN CENSUS COLLABORATORSJANSSEN, P. H.2016-02-03T11:11:11Z2016-02-03T11:11:11Z2016-02-0320152016-02-19T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleNature, Scientific Reports 5, article 14567, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035993enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:39:57Zoai:www.alice.cnptia.embrapa.br:doc/1035993Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:39:57falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:39:57Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
title Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
spellingShingle Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
HENDERSON, G.
Ruminant digestion
Metabolism of ruminant
title_short Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
title_full Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
title_fullStr Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
title_full_unstemmed Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
title_sort Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range.
author HENDERSON, G.
author_facet HENDERSON, G.
COX, F.
GANESH, S.
JONKER, A.
YOUNG, W.
GLOBAL RUMEN CENSUS COLLABORATORS
JANSSEN, P. H.
author_role author
author2 COX, F.
GANESH, S.
JONKER, A.
YOUNG, W.
GLOBAL RUMEN CENSUS COLLABORATORS
JANSSEN, P. H.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Gemma Henderson, AgResearch Limited, New Zealand; Faith Cox, AgResearch Limited, New Zealand; Siva Ganesh, AgResearch Limited, New Zealand; Arjan Jonker, AgResearch Limited, New Zealand; Wayne Young, AgResearch Limited, New Zealand; Global Rumen Census Collaborators; Peter H. Janssen, AgResearch Limited, New Zealand.
dc.contributor.author.fl_str_mv HENDERSON, G.
COX, F.
GANESH, S.
JONKER, A.
YOUNG, W.
GLOBAL RUMEN CENSUS COLLABORATORS
JANSSEN, P. H.
dc.subject.por.fl_str_mv Ruminant digestion
Metabolism of ruminant
topic Ruminant digestion
Metabolism of ruminant
description Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.
publishDate 2015
dc.date.none.fl_str_mv 2015
2016-02-03T11:11:11Z
2016-02-03T11:11:11Z
2016-02-03
2016-02-19T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Nature, Scientific Reports 5, article 14567, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035993
identifier_str_mv Nature, Scientific Reports 5, article 14567, 2015.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035993
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503417496862720