The Diamond STING Server.

Detalhes bibliográficos
Autor(a) principal: NESHIC, G.
Data de Publicação: 2005
Outros Autores: BORRO, L. C., HIGA, R. H., KUSER, P. R., YAMAGISHI, M. E., FRANCO, E. H., KRAUCHENCO, J. N., FILETO, R., RIBEIRO, A. A., BEZERRA, G. B., VELLUDO, T. M., JIMENEZ, T. S., FURUKAWA, N., TESHIMA, H., KITAJIMA, K., BAVA, A., SARAI, A. TOGAWA, R. C., MANCINI, A. L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/186091
Resumo: Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: JavaProtein Dossier (JPD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor?the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS.
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spelling The Diamond STING Server.Diamond STINGSTINGProtein structuresJavaProtein DossierDiamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: JavaProtein Dossier (JPD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor?the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS.Supplement.2018-06-11T16:59:21Z2018-06-11T16:59:21Z2005-09-0520052018-06-11T16:59:21Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleNucleic Acids Research, v. 33, n. 2, p. W29-W35, July 2005.http://www.alice.cnptia.embrapa.br/alice/handle/doc/186091engNESHIC, G.BORRO, L. C.HIGA, R. H.KUSER, P. R.YAMAGISHI, M. E.FRANCO, E. H.KRAUCHENCO, J. N.FILETO, R.RIBEIRO, A. A.BEZERRA, G. B.VELLUDO, T. M.JIMENEZ, T. S.FURUKAWA, N.TESHIMA, H.KITAJIMA, K.BAVA, A.SARAI, A. TOGAWA, R. C.MANCINI, A. L.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2018-06-11T16:59:27Zoai:www.alice.cnptia.embrapa.br:doc/186091Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542018-06-11T16:59:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542018-06-11T16:59:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv The Diamond STING Server.
title The Diamond STING Server.
spellingShingle The Diamond STING Server.
NESHIC, G.
Diamond STING
STING
Protein structures
JavaProtein Dossier
title_short The Diamond STING Server.
title_full The Diamond STING Server.
title_fullStr The Diamond STING Server.
title_full_unstemmed The Diamond STING Server.
title_sort The Diamond STING Server.
author NESHIC, G.
author_facet NESHIC, G.
BORRO, L. C.
HIGA, R. H.
KUSER, P. R.
YAMAGISHI, M. E.
FRANCO, E. H.
KRAUCHENCO, J. N.
FILETO, R.
RIBEIRO, A. A.
BEZERRA, G. B.
VELLUDO, T. M.
JIMENEZ, T. S.
FURUKAWA, N.
TESHIMA, H.
KITAJIMA, K.
BAVA, A.
SARAI, A. TOGAWA, R. C.
MANCINI, A. L.
author_role author
author2 BORRO, L. C.
HIGA, R. H.
KUSER, P. R.
YAMAGISHI, M. E.
FRANCO, E. H.
KRAUCHENCO, J. N.
FILETO, R.
RIBEIRO, A. A.
BEZERRA, G. B.
VELLUDO, T. M.
JIMENEZ, T. S.
FURUKAWA, N.
TESHIMA, H.
KITAJIMA, K.
BAVA, A.
SARAI, A. TOGAWA, R. C.
MANCINI, A. L.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv NESHIC, G.
BORRO, L. C.
HIGA, R. H.
KUSER, P. R.
YAMAGISHI, M. E.
FRANCO, E. H.
KRAUCHENCO, J. N.
FILETO, R.
RIBEIRO, A. A.
BEZERRA, G. B.
VELLUDO, T. M.
JIMENEZ, T. S.
FURUKAWA, N.
TESHIMA, H.
KITAJIMA, K.
BAVA, A.
SARAI, A. TOGAWA, R. C.
MANCINI, A. L.
dc.subject.por.fl_str_mv Diamond STING
STING
Protein structures
JavaProtein Dossier
topic Diamond STING
STING
Protein structures
JavaProtein Dossier
description Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: JavaProtein Dossier (JPD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor?the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS.
publishDate 2005
dc.date.none.fl_str_mv 2005-09-05
2005
2018-06-11T16:59:21Z
2018-06-11T16:59:21Z
2018-06-11T16:59:21Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Nucleic Acids Research, v. 33, n. 2, p. W29-W35, July 2005.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/186091
identifier_str_mv Nucleic Acids Research, v. 33, n. 2, p. W29-W35, July 2005.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/186091
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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