Early prediction models for cassava root yield in different water regimes.

Detalhes bibliográficos
Autor(a) principal: VITOR, A. B.
Data de Publicação: 2019
Outros Autores: DINIZ, R. P., MORGANTE, C. V., ANTONIO, R. P., OLIVEIRA, E. J. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114761
Resumo: The development of cassava (Manihot esculenta Crantz) varieties with greater tolerance of water deficit depends on optimized phenotyping tools. The objective of this work was to develop early prediction models of final root yield (12 months after planting - MAP) using physiological and agronomic data obtained at 4 MAP under two water regimes. Nine genotypes of cassava were evaluated under two treatments (irrigated and with water deficit), using a complete randomized block design, in a factorial scheme of 2 harvest periods (at 4 and 12 MAP) × 9 genotypes, with four replications. Both treatment groups were irrigated until 3 MAP. After this period, irrigation was interrupted for the water deficit treatment group. Fourteen physiological and agronomic traits were evaluated in all harvest periods. Four prediction models were evaluated: linear regression with stepwise selection (LRSS), linear regression with backward selection (LRBS), Bayesian ridge regression (BRR), and partial least squares (PLS). Most of the models presented a high predictive ability for final root yield (R2 ranging from 0.83 to 0.91). However, in all prediction scenarios, the PLS model presented a high R2 (0.84 to 0.91) associated with the lowest root-mean-square error (RMSE) (0.82 to 1.60). Differences in the predictive ability of the models may have occurred due to the relative importance of the early traits. In the case of PLS, the most important traits for the model were stomatal conductance, root yield at 4 MAP, leaf area index and number of roots. Regardless of the water condition, the physiological and agronomic data collected at an early stage could successfully be used to predict the final root yield with great efficiency. This strategy can reduce the cost of phenotyping, increasing the capacity for analysis and optimization of genetic gains for tolerance to drought in cassava.
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spelling Early prediction models for cassava root yield in different water regimes.Raízes de mandiocaDéfic hídricoFenotipagemMandiocaManihot EsculentaFisiologiaPlant breedingCassavaPhysiologyThe development of cassava (Manihot esculenta Crantz) varieties with greater tolerance of water deficit depends on optimized phenotyping tools. The objective of this work was to develop early prediction models of final root yield (12 months after planting - MAP) using physiological and agronomic data obtained at 4 MAP under two water regimes. Nine genotypes of cassava were evaluated under two treatments (irrigated and with water deficit), using a complete randomized block design, in a factorial scheme of 2 harvest periods (at 4 and 12 MAP) × 9 genotypes, with four replications. Both treatment groups were irrigated until 3 MAP. After this period, irrigation was interrupted for the water deficit treatment group. Fourteen physiological and agronomic traits were evaluated in all harvest periods. Four prediction models were evaluated: linear regression with stepwise selection (LRSS), linear regression with backward selection (LRBS), Bayesian ridge regression (BRR), and partial least squares (PLS). Most of the models presented a high predictive ability for final root yield (R2 ranging from 0.83 to 0.91). However, in all prediction scenarios, the PLS model presented a high R2 (0.84 to 0.91) associated with the lowest root-mean-square error (RMSE) (0.82 to 1.60). Differences in the predictive ability of the models may have occurred due to the relative importance of the early traits. In the case of PLS, the most important traits for the model were stomatal conductance, root yield at 4 MAP, leaf area index and number of roots. Regardless of the water condition, the physiological and agronomic data collected at an early stage could successfully be used to predict the final root yield with great efficiency. This strategy can reduce the cost of phenotyping, increasing the capacity for analysis and optimization of genetic gains for tolerance to drought in cassava.Alison Borges Vitor, Universidade Federal do Recôncavo da Bahia, Cruz das Almas, BA; Rafael Parreira Diniz, Universidade Federal do Recôncavo da Bahia, Cruz das Almas, BA; CAROLINA VIANNA MORGANTE, CPATSA; RAFAELA PRISCILA ANTONIO, CPATSA; EDER JORGE DE OLIVEIRA, CNPMF.VITOR, A. B.DINIZ, R. P.MORGANTE, C. V.ANTONIO, R. P.OLIVEIRA, E. J. de2019-11-21T18:05:23Z2019-11-21T18:05:23Z2019-11-2120192020-01-22T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleField Crops Research, v. 239, p. 149-158, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/111476110.1016/j.fcr.2019.05.017enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-11-21T18:05:30Zoai:www.alice.cnptia.embrapa.br:doc/1114761Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-11-21T18:05:30falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-11-21T18:05:30Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Early prediction models for cassava root yield in different water regimes.
title Early prediction models for cassava root yield in different water regimes.
spellingShingle Early prediction models for cassava root yield in different water regimes.
VITOR, A. B.
Raízes de mandioca
Défic hídrico
Fenotipagem
Mandioca
Manihot Esculenta
Fisiologia
Plant breeding
Cassava
Physiology
title_short Early prediction models for cassava root yield in different water regimes.
title_full Early prediction models for cassava root yield in different water regimes.
title_fullStr Early prediction models for cassava root yield in different water regimes.
title_full_unstemmed Early prediction models for cassava root yield in different water regimes.
title_sort Early prediction models for cassava root yield in different water regimes.
author VITOR, A. B.
author_facet VITOR, A. B.
DINIZ, R. P.
MORGANTE, C. V.
ANTONIO, R. P.
OLIVEIRA, E. J. de
author_role author
author2 DINIZ, R. P.
MORGANTE, C. V.
ANTONIO, R. P.
OLIVEIRA, E. J. de
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Alison Borges Vitor, Universidade Federal do Recôncavo da Bahia, Cruz das Almas, BA; Rafael Parreira Diniz, Universidade Federal do Recôncavo da Bahia, Cruz das Almas, BA; CAROLINA VIANNA MORGANTE, CPATSA; RAFAELA PRISCILA ANTONIO, CPATSA; EDER JORGE DE OLIVEIRA, CNPMF.
dc.contributor.author.fl_str_mv VITOR, A. B.
DINIZ, R. P.
MORGANTE, C. V.
ANTONIO, R. P.
OLIVEIRA, E. J. de
dc.subject.por.fl_str_mv Raízes de mandioca
Défic hídrico
Fenotipagem
Mandioca
Manihot Esculenta
Fisiologia
Plant breeding
Cassava
Physiology
topic Raízes de mandioca
Défic hídrico
Fenotipagem
Mandioca
Manihot Esculenta
Fisiologia
Plant breeding
Cassava
Physiology
description The development of cassava (Manihot esculenta Crantz) varieties with greater tolerance of water deficit depends on optimized phenotyping tools. The objective of this work was to develop early prediction models of final root yield (12 months after planting - MAP) using physiological and agronomic data obtained at 4 MAP under two water regimes. Nine genotypes of cassava were evaluated under two treatments (irrigated and with water deficit), using a complete randomized block design, in a factorial scheme of 2 harvest periods (at 4 and 12 MAP) × 9 genotypes, with four replications. Both treatment groups were irrigated until 3 MAP. After this period, irrigation was interrupted for the water deficit treatment group. Fourteen physiological and agronomic traits were evaluated in all harvest periods. Four prediction models were evaluated: linear regression with stepwise selection (LRSS), linear regression with backward selection (LRBS), Bayesian ridge regression (BRR), and partial least squares (PLS). Most of the models presented a high predictive ability for final root yield (R2 ranging from 0.83 to 0.91). However, in all prediction scenarios, the PLS model presented a high R2 (0.84 to 0.91) associated with the lowest root-mean-square error (RMSE) (0.82 to 1.60). Differences in the predictive ability of the models may have occurred due to the relative importance of the early traits. In the case of PLS, the most important traits for the model were stomatal conductance, root yield at 4 MAP, leaf area index and number of roots. Regardless of the water condition, the physiological and agronomic data collected at an early stage could successfully be used to predict the final root yield with great efficiency. This strategy can reduce the cost of phenotyping, increasing the capacity for analysis and optimization of genetic gains for tolerance to drought in cassava.
publishDate 2019
dc.date.none.fl_str_mv 2019-11-21T18:05:23Z
2019-11-21T18:05:23Z
2019-11-21
2019
2020-01-22T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Field Crops Research, v. 239, p. 149-158, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114761
10.1016/j.fcr.2019.05.017
identifier_str_mv Field Crops Research, v. 239, p. 149-158, 2019.
10.1016/j.fcr.2019.05.017
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114761
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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