Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads.
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117100 |
Resumo: | There has been much effort to improve the performance of pedotransfer functions (PTFs) using intelligent algorithms, but the issue of covariate shift, i.e., different probability distributions in training and testing datasets, and its impact on prediction uncertainty of PTFs has been rarely addressed. The common practice in PTF generation is to randomly separate the dataset into training and testing subsets, and the outcomes of this random selection may be different if the process is subject to covariate shift. We evaluated the impact of covariate shift generated by data shuffling and detected by Kolmogorov-Smirnov test for the prediction of water contents using soil databases from Denmark and Brazil. The soil water contents at different pressure heads were predicted by developing linear and stepwise regression besides machine learning based PTFs including Gaussian process regression and ensemble method. Regression based PTFs for the Brazilian dataset resulted in better predictions compared with machine learning methods, which in their turn estimated high water contents in Danish soils more accurately. One hundred PTFs were developed for water content at specific pressure heads by data shuffling. From these, 100 sets of fitted van Genuchten parameters were obtained representing the generated uncertainty. Data shuffling led to covariate shift, resulting in uncertainty in water content prediction by the PTFs. Inherent variability of data may lead to increased prediction uncertainty. For correlated data, simple regression models performed as good as sophisticated machine learning methods. Using PTF-predicted water contents for van Genuchten retention parameter fitting may lead to a high uncertainty. |
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Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads.Funções de pedotransferênciaCondutividade HidráulicaRetenção de Água no SoloPedotransfer functionsSoil water retentionHydraulic conductivityThere has been much effort to improve the performance of pedotransfer functions (PTFs) using intelligent algorithms, but the issue of covariate shift, i.e., different probability distributions in training and testing datasets, and its impact on prediction uncertainty of PTFs has been rarely addressed. The common practice in PTF generation is to randomly separate the dataset into training and testing subsets, and the outcomes of this random selection may be different if the process is subject to covariate shift. We evaluated the impact of covariate shift generated by data shuffling and detected by Kolmogorov-Smirnov test for the prediction of water contents using soil databases from Denmark and Brazil. The soil water contents at different pressure heads were predicted by developing linear and stepwise regression besides machine learning based PTFs including Gaussian process regression and ensemble method. Regression based PTFs for the Brazilian dataset resulted in better predictions compared with machine learning methods, which in their turn estimated high water contents in Danish soils more accurately. One hundred PTFs were developed for water content at specific pressure heads by data shuffling. From these, 100 sets of fitted van Genuchten parameters were obtained representing the generated uncertainty. Data shuffling led to covariate shift, resulting in uncertainty in water content prediction by the PTFs. Inherent variability of data may lead to increased prediction uncertainty. For correlated data, simple regression models performed as good as sophisticated machine learning methods. Using PTF-predicted water contents for van Genuchten retention parameter fitting may lead to a high uncertainty.ALI MEHMANDOOST KOTLAR, CENA/USP; QUIRIJN DE JONG VAN LIER, CENA/USP; ALEXANDRE HUGO CEZAR BARROS, CNPS; BO V. IVERSEN, AARHUS UNIV., DENMARK; HARRY VEREECKEN, INSTITUTE OF BIO- AND GEOSCIENCES (IBG-3), AGROSPHERE, FORSCHUNGSZENTRUM JULICH, GERMANY.KOTLAR, A. M.LIER, Q. de J. vanBARROS, A. H. C.IVERSEN, B. V.VEREECKEN, H.2019-12-18T00:36:48Z2019-12-18T00:36:48Z2019-12-1720192019-12-18T00:36:48Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleVadose Zone Journal, v. 18, n. 1, 190063, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/111710010.2136/vzj2019.06.0063enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-12-18T00:36:55Zoai:www.alice.cnptia.embrapa.br:doc/1117100Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-12-18T00:36:55falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-12-18T00:36:55Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
title |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
spellingShingle |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. KOTLAR, A. M. Funções de pedotransferência Condutividade Hidráulica Retenção de Água no Solo Pedotransfer functions Soil water retention Hydraulic conductivity |
title_short |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
title_full |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
title_fullStr |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
title_full_unstemmed |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
title_sort |
Development and uncertainty assessment of pedotransfer functions for predicting water contents at specific pressure heads. |
author |
KOTLAR, A. M. |
author_facet |
KOTLAR, A. M. LIER, Q. de J. van BARROS, A. H. C. IVERSEN, B. V. VEREECKEN, H. |
author_role |
author |
author2 |
LIER, Q. de J. van BARROS, A. H. C. IVERSEN, B. V. VEREECKEN, H. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
ALI MEHMANDOOST KOTLAR, CENA/USP; QUIRIJN DE JONG VAN LIER, CENA/USP; ALEXANDRE HUGO CEZAR BARROS, CNPS; BO V. IVERSEN, AARHUS UNIV., DENMARK; HARRY VEREECKEN, INSTITUTE OF BIO- AND GEOSCIENCES (IBG-3), AGROSPHERE, FORSCHUNGSZENTRUM JULICH, GERMANY. |
dc.contributor.author.fl_str_mv |
KOTLAR, A. M. LIER, Q. de J. van BARROS, A. H. C. IVERSEN, B. V. VEREECKEN, H. |
dc.subject.por.fl_str_mv |
Funções de pedotransferência Condutividade Hidráulica Retenção de Água no Solo Pedotransfer functions Soil water retention Hydraulic conductivity |
topic |
Funções de pedotransferência Condutividade Hidráulica Retenção de Água no Solo Pedotransfer functions Soil water retention Hydraulic conductivity |
description |
There has been much effort to improve the performance of pedotransfer functions (PTFs) using intelligent algorithms, but the issue of covariate shift, i.e., different probability distributions in training and testing datasets, and its impact on prediction uncertainty of PTFs has been rarely addressed. The common practice in PTF generation is to randomly separate the dataset into training and testing subsets, and the outcomes of this random selection may be different if the process is subject to covariate shift. We evaluated the impact of covariate shift generated by data shuffling and detected by Kolmogorov-Smirnov test for the prediction of water contents using soil databases from Denmark and Brazil. The soil water contents at different pressure heads were predicted by developing linear and stepwise regression besides machine learning based PTFs including Gaussian process regression and ensemble method. Regression based PTFs for the Brazilian dataset resulted in better predictions compared with machine learning methods, which in their turn estimated high water contents in Danish soils more accurately. One hundred PTFs were developed for water content at specific pressure heads by data shuffling. From these, 100 sets of fitted van Genuchten parameters were obtained representing the generated uncertainty. Data shuffling led to covariate shift, resulting in uncertainty in water content prediction by the PTFs. Inherent variability of data may lead to increased prediction uncertainty. For correlated data, simple regression models performed as good as sophisticated machine learning methods. Using PTF-predicted water contents for van Genuchten retention parameter fitting may lead to a high uncertainty. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-12-18T00:36:48Z 2019-12-18T00:36:48Z 2019-12-17 2019 2019-12-18T00:36:48Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Vadose Zone Journal, v. 18, n. 1, 190063, 2019. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117100 10.2136/vzj2019.06.0063 |
identifier_str_mv |
Vadose Zone Journal, v. 18, n. 1, 190063, 2019. 10.2136/vzj2019.06.0063 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117100 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503486121967616 |