Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.

Detalhes bibliográficos
Autor(a) principal: SOUZA, A. V. de
Data de Publicação: 2021
Outros Autores: CARVALHO, J. R. de S., COSTA, E. S. S., SOUZA, C. S. de, SILVA, H. F. de J., LUZ, J. M. Q., MACIEL, G. M., SIQUIEROLI, A. C. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1132967
https://doi.org/10.1590/1806-908820210000008
Resumo: The evaluation of accessions in a germplasm bank is essential for determining the potential parents in conservation programs, especially for native trees. This study aimed to determine the genetic diversity among 68 Amburana cearensis genotypes from different locations in the state of Pernambuco, Brazil. Their genetic patterns were evaluated by Inter Simple Sequence Repeat (ISSR) molecular markers and genetic divergence was evaluated through multivariate analyses using different clustering methods. The optimization method used (Tocher) was in agreement with all the hierarchical models used, in which clustering of the genotypes occurred similarly, specifically for the accession BB116, which is an important genetic material to be preserved and studied. Among the various hierarchical methods applied, the Average Linkage method exhibited higher discrimination power, allowing identification of a larger number of divergent groups, thus implying wide genetic diversity among A. cearensis accessions.
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spelling Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.Amburana cearensisConservação genéticaÁrvore nativaPlanta nativaAmburana de cheiroImburana de CambãoCaatingaBanco de GermoplasmaGenótipoPlanta MedicinalNatural resourcesThe evaluation of accessions in a germplasm bank is essential for determining the potential parents in conservation programs, especially for native trees. This study aimed to determine the genetic diversity among 68 Amburana cearensis genotypes from different locations in the state of Pernambuco, Brazil. Their genetic patterns were evaluated by Inter Simple Sequence Repeat (ISSR) molecular markers and genetic divergence was evaluated through multivariate analyses using different clustering methods. The optimization method used (Tocher) was in agreement with all the hierarchical models used, in which clustering of the genotypes occurred similarly, specifically for the accession BB116, which is an important genetic material to be preserved and studied. Among the various hierarchical methods applied, the Average Linkage method exhibited higher discrimination power, allowing identification of a larger number of divergent groups, thus implying wide genetic diversity among A. cearensis accessions.ANA VALERIA VIEIRA DE SOUZA, CPATSA; JACKSON RAFAEL DE SÁ CARVALHO; EVELYN SOPHIA SILVA COSTA; CRISTINA SOARES DE SOUZA; HERICK FERNANDO DE JESUS SILVA; JOSÉ MAGNO QUEIROZ LUZ; GABRIEL MASCARENHAS MACIEL; ANA CAROLINA SILVA SIQUIEROLI.SOUZA, A. V. deCARVALHO, J. R. de S.COSTA, E. S. S.SOUZA, C. S. deSILVA, H. F. de J.LUZ, J. M. Q.MACIEL, G. M.SIQUIEROLI, A. C. S.2021-07-16T13:06:31Z2021-07-16T13:06:31Z2021-07-162021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleRevista Árvore, v. 45, e4508, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1132967https://doi.org/10.1590/1806-908820210000008enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2021-07-16T13:06:40Zoai:www.alice.cnptia.embrapa.br:doc/1132967Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542021-07-16T13:06:40falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542021-07-16T13:06:40Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
title Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
spellingShingle Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
SOUZA, A. V. de
Amburana cearensis
Conservação genética
Árvore nativa
Planta nativa
Amburana de cheiro
Imburana de Cambão
Caatinga
Banco de Germoplasma
Genótipo
Planta Medicinal
Natural resources
title_short Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
title_full Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
title_fullStr Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
title_full_unstemmed Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
title_sort Genetic diversity in Amburana (Amburana cearensis) accessions: hierarchical and optimization methods.
author SOUZA, A. V. de
author_facet SOUZA, A. V. de
CARVALHO, J. R. de S.
COSTA, E. S. S.
SOUZA, C. S. de
SILVA, H. F. de J.
LUZ, J. M. Q.
MACIEL, G. M.
SIQUIEROLI, A. C. S.
author_role author
author2 CARVALHO, J. R. de S.
COSTA, E. S. S.
SOUZA, C. S. de
SILVA, H. F. de J.
LUZ, J. M. Q.
MACIEL, G. M.
SIQUIEROLI, A. C. S.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ANA VALERIA VIEIRA DE SOUZA, CPATSA; JACKSON RAFAEL DE SÁ CARVALHO; EVELYN SOPHIA SILVA COSTA; CRISTINA SOARES DE SOUZA; HERICK FERNANDO DE JESUS SILVA; JOSÉ MAGNO QUEIROZ LUZ; GABRIEL MASCARENHAS MACIEL; ANA CAROLINA SILVA SIQUIEROLI.
dc.contributor.author.fl_str_mv SOUZA, A. V. de
CARVALHO, J. R. de S.
COSTA, E. S. S.
SOUZA, C. S. de
SILVA, H. F. de J.
LUZ, J. M. Q.
MACIEL, G. M.
SIQUIEROLI, A. C. S.
dc.subject.por.fl_str_mv Amburana cearensis
Conservação genética
Árvore nativa
Planta nativa
Amburana de cheiro
Imburana de Cambão
Caatinga
Banco de Germoplasma
Genótipo
Planta Medicinal
Natural resources
topic Amburana cearensis
Conservação genética
Árvore nativa
Planta nativa
Amburana de cheiro
Imburana de Cambão
Caatinga
Banco de Germoplasma
Genótipo
Planta Medicinal
Natural resources
description The evaluation of accessions in a germplasm bank is essential for determining the potential parents in conservation programs, especially for native trees. This study aimed to determine the genetic diversity among 68 Amburana cearensis genotypes from different locations in the state of Pernambuco, Brazil. Their genetic patterns were evaluated by Inter Simple Sequence Repeat (ISSR) molecular markers and genetic divergence was evaluated through multivariate analyses using different clustering methods. The optimization method used (Tocher) was in agreement with all the hierarchical models used, in which clustering of the genotypes occurred similarly, specifically for the accession BB116, which is an important genetic material to be preserved and studied. Among the various hierarchical methods applied, the Average Linkage method exhibited higher discrimination power, allowing identification of a larger number of divergent groups, thus implying wide genetic diversity among A. cearensis accessions.
publishDate 2021
dc.date.none.fl_str_mv 2021-07-16T13:06:31Z
2021-07-16T13:06:31Z
2021-07-16
2021
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Revista Árvore, v. 45, e4508, 2021.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1132967
https://doi.org/10.1590/1806-908820210000008
identifier_str_mv Revista Árvore, v. 45, e4508, 2021.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1132967
https://doi.org/10.1590/1806-908820210000008
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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