Coconut genome size determined by flow cytometry: tall versus dwarf types.
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | por |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274 http://dx.doi.org/10.4238/gmr.15017470 |
Resumo: | Coconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type. |
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Coconut genome size determined by flow cytometry: tall versus dwarf types.Cocos nucifera LDNA contentC-valueCoconut accessionsPalm treeCoconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type.2016-03-31T11:11:11Z2016-03-31T11:11:11Z2016-03-3120162018-01-26T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 15, n. 1, february, 2016.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274http://dx.doi.org/10.4238/gmr.15017470porFREITAS NETO, M.PEREIRA, T. N. S.GERONIMO, I. G. C.AZEVEDO, A. O. N.RAMOS, S. R. R.PEREIRA, M. G.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:10:35Zoai:www.alice.cnptia.embrapa.br:doc/1042274Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:10:35falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:10:35Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
title |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
spellingShingle |
Coconut genome size determined by flow cytometry: tall versus dwarf types. FREITAS NETO, M. Cocos nucifera L DNA content C-value Coconut accessions Palm tree |
title_short |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
title_full |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
title_fullStr |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
title_full_unstemmed |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
title_sort |
Coconut genome size determined by flow cytometry: tall versus dwarf types. |
author |
FREITAS NETO, M. |
author_facet |
FREITAS NETO, M. PEREIRA, T. N. S. GERONIMO, I. G. C. AZEVEDO, A. O. N. RAMOS, S. R. R. PEREIRA, M. G. |
author_role |
author |
author2 |
PEREIRA, T. N. S. GERONIMO, I. G. C. AZEVEDO, A. O. N. RAMOS, S. R. R. PEREIRA, M. G. |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
FREITAS NETO, M. PEREIRA, T. N. S. GERONIMO, I. G. C. AZEVEDO, A. O. N. RAMOS, S. R. R. PEREIRA, M. G. |
dc.subject.por.fl_str_mv |
Cocos nucifera L DNA content C-value Coconut accessions Palm tree |
topic |
Cocos nucifera L DNA content C-value Coconut accessions Palm tree |
description |
Coconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-03-31T11:11:11Z 2016-03-31T11:11:11Z 2016-03-31 2016 2018-01-26T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Research, v. 15, n. 1, february, 2016. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274 http://dx.doi.org/10.4238/gmr.15017470 |
identifier_str_mv |
Genetics and Molecular Research, v. 15, n. 1, february, 2016. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274 http://dx.doi.org/10.4238/gmr.15017470 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503420220014592 |