Coconut genome size determined by flow cytometry: tall versus dwarf types.

Detalhes bibliográficos
Autor(a) principal: FREITAS NETO, M.
Data de Publicação: 2016
Outros Autores: PEREIRA, T. N. S., GERONIMO, I. G. C., AZEVEDO, A. O. N., RAMOS, S. R. R., PEREIRA, M. G.
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274
http://dx.doi.org/10.4238/gmr.15017470
Resumo: Coconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type.
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spelling Coconut genome size determined by flow cytometry: tall versus dwarf types.Cocos nucifera LDNA contentC-valueCoconut accessionsPalm treeCoconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type.2016-03-31T11:11:11Z2016-03-31T11:11:11Z2016-03-3120162018-01-26T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 15, n. 1, february, 2016.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274http://dx.doi.org/10.4238/gmr.15017470porFREITAS NETO, M.PEREIRA, T. N. S.GERONIMO, I. G. C.AZEVEDO, A. O. N.RAMOS, S. R. R.PEREIRA, M. G.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:10:35Zoai:www.alice.cnptia.embrapa.br:doc/1042274Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:10:35falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:10:35Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Coconut genome size determined by flow cytometry: tall versus dwarf types.
title Coconut genome size determined by flow cytometry: tall versus dwarf types.
spellingShingle Coconut genome size determined by flow cytometry: tall versus dwarf types.
FREITAS NETO, M.
Cocos nucifera L
DNA content
C-value
Coconut accessions
Palm tree
title_short Coconut genome size determined by flow cytometry: tall versus dwarf types.
title_full Coconut genome size determined by flow cytometry: tall versus dwarf types.
title_fullStr Coconut genome size determined by flow cytometry: tall versus dwarf types.
title_full_unstemmed Coconut genome size determined by flow cytometry: tall versus dwarf types.
title_sort Coconut genome size determined by flow cytometry: tall versus dwarf types.
author FREITAS NETO, M.
author_facet FREITAS NETO, M.
PEREIRA, T. N. S.
GERONIMO, I. G. C.
AZEVEDO, A. O. N.
RAMOS, S. R. R.
PEREIRA, M. G.
author_role author
author2 PEREIRA, T. N. S.
GERONIMO, I. G. C.
AZEVEDO, A. O. N.
RAMOS, S. R. R.
PEREIRA, M. G.
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv FREITAS NETO, M.
PEREIRA, T. N. S.
GERONIMO, I. G. C.
AZEVEDO, A. O. N.
RAMOS, S. R. R.
PEREIRA, M. G.
dc.subject.por.fl_str_mv Cocos nucifera L
DNA content
C-value
Coconut accessions
Palm tree
topic Cocos nucifera L
DNA content
C-value
Coconut accessions
Palm tree
description Coconuts (Cocos nucifera L.) are tropical palm trees that are classified into Tall and Dwarf types based on height, and both types are diploid (2n = 2x = 32 chromosomes). The reproduction mode is autogamous for Dwarf types and allogamous for Tall types. One hypothesis for the origin of the Dwarf coconut suggests that it is a Tall variant that resulted from either mutation or inbreeding, and differences in genome size between the two types would support this hypothesis. In this study, we estimated the genome sizes of 14 coconut accessions (eight Tall and six Dwarf types) using flow cytometry. Nuclei were extracted from leaf discs and stained with propidium iodide, and Pisum sativum (2C = 9.07 pg DNA) was used as an internal standard. Histograms with good resolution and low coefficients of variation (2.5 to 3.2%) were obtained. The 2C DNA content ranged from 5.72 to 5.48 pg for Tall accessions and from 5.58 to 5.52 pg for Dwarf accessions. The mean genome sizes for Tall and Dwarf specimens were 5.59 and 5.55 pg, respectively. Among all accessions, Rennel Island Tall had the highest mean DNA content (5.72 pg), whereas West African Tall had the lowest (5.48 pg). The mean coconut genome size (2C = 5.57 pg, 2M. Freitas Neto et al.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 15 (1): gmr.15017470 corresponding to 2723.73 Mbp/haploid set) was classified as small. Only small differences in genome size existed among the coconut accessions, suggesting that the Dwarf type did not evolve from the Tall type.
publishDate 2016
dc.date.none.fl_str_mv 2016-03-31T11:11:11Z
2016-03-31T11:11:11Z
2016-03-31
2016
2018-01-26T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 15, n. 1, february, 2016.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274
http://dx.doi.org/10.4238/gmr.15017470
identifier_str_mv Genetics and Molecular Research, v. 15, n. 1, february, 2016.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1042274
http://dx.doi.org/10.4238/gmr.15017470
dc.language.iso.fl_str_mv por
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dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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