Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations.
Autor(a) principal: | |
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Data de Publicação: | 2005 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1094446 |
Resumo: | The genetic diversity of 277 nucleotides in the mitochondrial DNA control region (nt 15,964 to 16,240 in reference sequence) was analyzed in crossbreed beef cattle (Brangus-Ibage, 5/8 Bos primigenius taurus x 3/8 Bos primigenius indicus) as well as in some Nellore samples (B. p. indicus). Fifty-seven mutations were found in Brangus-Ibage comprising 18 haplotypes (haplotype diversity, h = 0.851 ± 0.041 and nucleotide diversity, ntd = 0.009 ± 0.006) and 66 in Nellore (h = 1.00 ± 0.27, ntd = 0.014 ± 0.012). These data indicated sequence identities of 99.6 and 92.1% between the B. p. taurus' reference sequence and Brangus-Ibage and Nellore, respectively. The comparison of our data with sequence data for 612 individuals recovered from GenBank showed a total of 205 haplotypes defined by 99 polymorphic sites. Most of the variability (53%) was due to differentiation within breeds. The phylogenetic tree constructed using the neighbor-joining method showed clearly the well-known dichotomy between B. p. taurus and B. p. indicus. The Brangus-Ibage clustered with B. p. taurus lineages; however, the displacement of Nellore from B. p. indicus branch probably indicates a substantial B. p. taurus maternal ancestry in some Nellore samples (obtained from GenBank) and reflects the primarily male-driven introduction of this breed in Brazil. |
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Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations.Brangus-IbageBovinoDNAMitocôndriaLinhagemThe genetic diversity of 277 nucleotides in the mitochondrial DNA control region (nt 15,964 to 16,240 in reference sequence) was analyzed in crossbreed beef cattle (Brangus-Ibage, 5/8 Bos primigenius taurus x 3/8 Bos primigenius indicus) as well as in some Nellore samples (B. p. indicus). Fifty-seven mutations were found in Brangus-Ibage comprising 18 haplotypes (haplotype diversity, h = 0.851 ± 0.041 and nucleotide diversity, ntd = 0.009 ± 0.006) and 66 in Nellore (h = 1.00 ± 0.27, ntd = 0.014 ± 0.012). These data indicated sequence identities of 99.6 and 92.1% between the B. p. taurus' reference sequence and Brangus-Ibage and Nellore, respectively. The comparison of our data with sequence data for 612 individuals recovered from GenBank showed a total of 205 haplotypes defined by 99 polymorphic sites. Most of the variability (53%) was due to differentiation within breeds. The phylogenetic tree constructed using the neighbor-joining method showed clearly the well-known dichotomy between B. p. taurus and B. p. indicus. The Brangus-Ibage clustered with B. p. taurus lineages; however, the displacement of Nellore from B. p. indicus branch probably indicates a substantial B. p. taurus maternal ancestry in some Nellore samples (obtained from GenBank) and reflects the primarily male-driven introduction of this breed in Brazil.Luiz Ernani Henkes, UFRGS; Wilson Araújo Silva Junior, CTC; JOSE CARLOS FERRUGEM MORAES, CPPSUL; Tania Azevedo Weimer, UFRGS.HENKES, L. E.SILVA JUNIOR, W. A.MORAES, J. C. F.WEIMER, T. A.2018-08-24T00:54:40Z2018-08-24T00:54:40Z2018-08-2320052018-08-24T00:54:40Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Biology, v. 28, n. 1, p. 60-66, 2005.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1094446enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2018-08-24T00:54:46Zoai:www.alice.cnptia.embrapa.br:doc/1094446Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542018-08-24T00:54:46falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542018-08-24T00:54:46Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
title |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
spellingShingle |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. HENKES, L. E. Brangus-Ibage Bovino DNA Mitocôndria Linhagem |
title_short |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
title_full |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
title_fullStr |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
title_full_unstemmed |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
title_sort |
Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. |
author |
HENKES, L. E. |
author_facet |
HENKES, L. E. SILVA JUNIOR, W. A. MORAES, J. C. F. WEIMER, T. A. |
author_role |
author |
author2 |
SILVA JUNIOR, W. A. MORAES, J. C. F. WEIMER, T. A. |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Luiz Ernani Henkes, UFRGS; Wilson Araújo Silva Junior, CTC; JOSE CARLOS FERRUGEM MORAES, CPPSUL; Tania Azevedo Weimer, UFRGS. |
dc.contributor.author.fl_str_mv |
HENKES, L. E. SILVA JUNIOR, W. A. MORAES, J. C. F. WEIMER, T. A. |
dc.subject.por.fl_str_mv |
Brangus-Ibage Bovino DNA Mitocôndria Linhagem |
topic |
Brangus-Ibage Bovino DNA Mitocôndria Linhagem |
description |
The genetic diversity of 277 nucleotides in the mitochondrial DNA control region (nt 15,964 to 16,240 in reference sequence) was analyzed in crossbreed beef cattle (Brangus-Ibage, 5/8 Bos primigenius taurus x 3/8 Bos primigenius indicus) as well as in some Nellore samples (B. p. indicus). Fifty-seven mutations were found in Brangus-Ibage comprising 18 haplotypes (haplotype diversity, h = 0.851 ± 0.041 and nucleotide diversity, ntd = 0.009 ± 0.006) and 66 in Nellore (h = 1.00 ± 0.27, ntd = 0.014 ± 0.012). These data indicated sequence identities of 99.6 and 92.1% between the B. p. taurus' reference sequence and Brangus-Ibage and Nellore, respectively. The comparison of our data with sequence data for 612 individuals recovered from GenBank showed a total of 205 haplotypes defined by 99 polymorphic sites. Most of the variability (53%) was due to differentiation within breeds. The phylogenetic tree constructed using the neighbor-joining method showed clearly the well-known dichotomy between B. p. taurus and B. p. indicus. The Brangus-Ibage clustered with B. p. taurus lineages; however, the displacement of Nellore from B. p. indicus branch probably indicates a substantial B. p. taurus maternal ancestry in some Nellore samples (obtained from GenBank) and reflects the primarily male-driven introduction of this breed in Brazil. |
publishDate |
2005 |
dc.date.none.fl_str_mv |
2005 2018-08-24T00:54:40Z 2018-08-24T00:54:40Z 2018-08-23 2018-08-24T00:54:40Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Biology, v. 28, n. 1, p. 60-66, 2005. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1094446 |
identifier_str_mv |
Genetics and Molecular Biology, v. 28, n. 1, p. 60-66, 2005. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1094446 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503461176344576 |