Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863 |
Resumo: | In this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future. |
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Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometryBovine tuberculosisMycobacterium bovis BCGMycobacterium tuberculosis complexIn this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future.GISELE BACANELLI, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação em Biotecnologia e Biodiversidade da Região Centro-OesteLARISSA C. OLARTE, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação Multicêntrica em Bioquímica e Biologia MolecularMARCIO ROBERTO SILVA, CNPGLRUDIELLE A. RODRIGUES, Universidade Federal de Mato Grosso do Sul - UFMS/Faculdade de Medicina Veterinária/Programa de Pós-Graduação em Ciências VeterináriasPAULO A. M. CARNEIRO, Michigan State University/Center for Comparative EpidemiologyJOHN B. KANEENE, Michigan State University/Center for Comparative EpidemiologyTAYNARA N. PASQUATTI, Universidade Católica Dom Bosco - UCDBHARUO TAKATANI, Agência de Defesa Agrícola do AmazonasMARTIN J. ZUMÁRRAGA, Institute of Biotechnology, CICVyA/INTARODRIGO N. ETGES, Secretário de Agricultura, Pecuária e Irrigação de Porto AlegreFLABIO RIBEIRO DE ARAUJO, CNPGCNEWTON VALERIO VERBISCK, CNPGC.BACANELLI, G.OLARTE, L. C.SILVA, M. R.RODRIGUES, R. A.CARNEIRO, P. A. M.KANEENE, J. B.PASQUATTI, T. N.TAKATANI, H.ZUMÁRRAGA, M. J.ETGES, R. N.ARAUJO, F. R.VERBISCK, N. V.2019-12-30T18:11:10Z2019-12-30T18:11:10Z2019-12-3020192019-12-30T18:11:10Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleJournal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-12-30T18:11:17Zoai:www.alice.cnptia.embrapa.br:doc/1117863Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-12-30T18:11:17falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-12-30T18:11:17Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
title |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
spellingShingle |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. BACANELLI, G. Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry Bovine tuberculosis Mycobacterium bovis BCG Mycobacterium tuberculosis complex |
title_short |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
title_full |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
title_fullStr |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
title_full_unstemmed |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
title_sort |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae. |
author |
BACANELLI, G. |
author_facet |
BACANELLI, G. OLARTE, L. C. SILVA, M. R. RODRIGUES, R. A. CARNEIRO, P. A. M. KANEENE, J. B. PASQUATTI, T. N. TAKATANI, H. ZUMÁRRAGA, M. J. ETGES, R. N. ARAUJO, F. R. VERBISCK, N. V. |
author_role |
author |
author2 |
OLARTE, L. C. SILVA, M. R. RODRIGUES, R. A. CARNEIRO, P. A. M. KANEENE, J. B. PASQUATTI, T. N. TAKATANI, H. ZUMÁRRAGA, M. J. ETGES, R. N. ARAUJO, F. R. VERBISCK, N. V. |
author2_role |
author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
GISELE BACANELLI, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação em Biotecnologia e Biodiversidade da Região Centro-Oeste LARISSA C. OLARTE, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação Multicêntrica em Bioquímica e Biologia Molecular MARCIO ROBERTO SILVA, CNPGL RUDIELLE A. RODRIGUES, Universidade Federal de Mato Grosso do Sul - UFMS/Faculdade de Medicina Veterinária/Programa de Pós-Graduação em Ciências Veterinárias PAULO A. M. CARNEIRO, Michigan State University/Center for Comparative Epidemiology JOHN B. KANEENE, Michigan State University/Center for Comparative Epidemiology TAYNARA N. PASQUATTI, Universidade Católica Dom Bosco - UCDB HARUO TAKATANI, Agência de Defesa Agrícola do Amazonas MARTIN J. ZUMÁRRAGA, Institute of Biotechnology, CICVyA/INTA RODRIGO N. ETGES, Secretário de Agricultura, Pecuária e Irrigação de Porto Alegre FLABIO RIBEIRO DE ARAUJO, CNPGC NEWTON VALERIO VERBISCK, CNPGC. |
dc.contributor.author.fl_str_mv |
BACANELLI, G. OLARTE, L. C. SILVA, M. R. RODRIGUES, R. A. CARNEIRO, P. A. M. KANEENE, J. B. PASQUATTI, T. N. TAKATANI, H. ZUMÁRRAGA, M. J. ETGES, R. N. ARAUJO, F. R. VERBISCK, N. V. |
dc.subject.por.fl_str_mv |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry Bovine tuberculosis Mycobacterium bovis BCG Mycobacterium tuberculosis complex |
topic |
Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry Bovine tuberculosis Mycobacterium bovis BCG Mycobacterium tuberculosis complex |
description |
In this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-12-30T18:11:10Z 2019-12-30T18:11:10Z 2019-12-30 2019 2019-12-30T18:11:10Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Journal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863 |
identifier_str_mv |
Journal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
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EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503487118114816 |