Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.

Detalhes bibliográficos
Autor(a) principal: BACANELLI, G.
Data de Publicação: 2019
Outros Autores: OLARTE, L. C., SILVA, M. R., RODRIGUES, R. A., CARNEIRO, P. A. M., KANEENE, J. B., PASQUATTI, T. N., TAKATANI, H., ZUMÁRRAGA, M. J., ETGES, R. N., ARAUJO, F. R., VERBISCK, N. V.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863
Resumo: In this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future.
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spelling Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometryBovine tuberculosisMycobacterium bovis BCGMycobacterium tuberculosis complexIn this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future.GISELE BACANELLI, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação em Biotecnologia e Biodiversidade da Região Centro-OesteLARISSA C. OLARTE, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação Multicêntrica em Bioquímica e Biologia MolecularMARCIO ROBERTO SILVA, CNPGLRUDIELLE A. RODRIGUES, Universidade Federal de Mato Grosso do Sul - UFMS/Faculdade de Medicina Veterinária/Programa de Pós-Graduação em Ciências VeterináriasPAULO A. M. CARNEIRO, Michigan State University/Center for Comparative EpidemiologyJOHN B. KANEENE, Michigan State University/Center for Comparative EpidemiologyTAYNARA N. PASQUATTI, Universidade Católica Dom Bosco - UCDBHARUO TAKATANI, Agência de Defesa Agrícola do AmazonasMARTIN J. ZUMÁRRAGA, Institute of Biotechnology, CICVyA/INTARODRIGO N. ETGES, Secretário de Agricultura, Pecuária e Irrigação de Porto AlegreFLABIO RIBEIRO DE ARAUJO, CNPGCNEWTON VALERIO VERBISCK, CNPGC.BACANELLI, G.OLARTE, L. C.SILVA, M. R.RODRIGUES, R. A.CARNEIRO, P. A. M.KANEENE, J. B.PASQUATTI, T. N.TAKATANI, H.ZUMÁRRAGA, M. J.ETGES, R. N.ARAUJO, F. R.VERBISCK, N. V.2019-12-30T18:11:10Z2019-12-30T18:11:10Z2019-12-3020192019-12-30T18:11:10Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleJournal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-12-30T18:11:17Zoai:www.alice.cnptia.embrapa.br:doc/1117863Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-12-30T18:11:17falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-12-30T18:11:17Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
title Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
spellingShingle Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
BACANELLI, G.
Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry
Bovine tuberculosis
Mycobacterium bovis BCG
Mycobacterium tuberculosis complex
title_short Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
title_full Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
title_fullStr Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
title_full_unstemmed Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
title_sort Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae.
author BACANELLI, G.
author_facet BACANELLI, G.
OLARTE, L. C.
SILVA, M. R.
RODRIGUES, R. A.
CARNEIRO, P. A. M.
KANEENE, J. B.
PASQUATTI, T. N.
TAKATANI, H.
ZUMÁRRAGA, M. J.
ETGES, R. N.
ARAUJO, F. R.
VERBISCK, N. V.
author_role author
author2 OLARTE, L. C.
SILVA, M. R.
RODRIGUES, R. A.
CARNEIRO, P. A. M.
KANEENE, J. B.
PASQUATTI, T. N.
TAKATANI, H.
ZUMÁRRAGA, M. J.
ETGES, R. N.
ARAUJO, F. R.
VERBISCK, N. V.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv GISELE BACANELLI, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação em Biotecnologia e Biodiversidade da Região Centro-Oeste
LARISSA C. OLARTE, Universidade Federal de Mato Grosso do Sul - UFMS/Programa de Pós-Graduação Multicêntrica em Bioquímica e Biologia Molecular
MARCIO ROBERTO SILVA, CNPGL
RUDIELLE A. RODRIGUES, Universidade Federal de Mato Grosso do Sul - UFMS/Faculdade de Medicina Veterinária/Programa de Pós-Graduação em Ciências Veterinárias
PAULO A. M. CARNEIRO, Michigan State University/Center for Comparative Epidemiology
JOHN B. KANEENE, Michigan State University/Center for Comparative Epidemiology
TAYNARA N. PASQUATTI, Universidade Católica Dom Bosco - UCDB
HARUO TAKATANI, Agência de Defesa Agrícola do Amazonas
MARTIN J. ZUMÁRRAGA, Institute of Biotechnology, CICVyA/INTA
RODRIGO N. ETGES, Secretário de Agricultura, Pecuária e Irrigação de Porto Alegre
FLABIO RIBEIRO DE ARAUJO, CNPGC
NEWTON VALERIO VERBISCK, CNPGC.
dc.contributor.author.fl_str_mv BACANELLI, G.
OLARTE, L. C.
SILVA, M. R.
RODRIGUES, R. A.
CARNEIRO, P. A. M.
KANEENE, J. B.
PASQUATTI, T. N.
TAKATANI, H.
ZUMÁRRAGA, M. J.
ETGES, R. N.
ARAUJO, F. R.
VERBISCK, N. V.
dc.subject.por.fl_str_mv Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry
Bovine tuberculosis
Mycobacterium bovis BCG
Mycobacterium tuberculosis complex
topic Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDI-TOF) mass spectrometry
Bovine tuberculosis
Mycobacterium bovis BCG
Mycobacterium tuberculosis complex
description In this study, Matrix Assisted Laser Desorption Ionization-Time-of-Flight (MALDITOF) mass spectrometry was used to identify Mycobacterium bovis from cattle and buffalo tissue isolates from the North and South regions of Brazil, grown in solid medium and previously identified by Polymerase Chain Reaction (PCR) based on Region of Difference 4 (RD4), sequencing and spoligotyping. For this purpose, the protein extraction protocol and the mass spectra reference database were optimized for the identification of 80 clinical isolates of mycobacteria. As a result of this optimization, it was possible to identify and differentiate M. bovis from other members of the Mycobacterium tuberculosis complex with 100% specificity, 90.91% sensitivity and 91.25% reliability. MALDI-TOF MS methodology described herein provides successful identification of M. bovis within bovine/bubaline clinical samples, demonstrating its usefulness for bovine tuberculosis diagnosis in the future.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-30T18:11:10Z
2019-12-30T18:11:10Z
2019-12-30
2019
2019-12-30T18:11:10Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Journal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863
identifier_str_mv Journal the Veterinary Medical Science, v. 81, n. 10, p.1400?1408, 2019.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1117863
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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