In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine

Detalhes bibliográficos
Autor(a) principal: Macedo Junior, Lafayete Modesto de
Data de Publicação: 2019
Outros Autores: Melo, Tuane Ferreira, Peconick, Ana Paula
Tipo de documento: Artigo
Idioma: por
Título da fonte: Scire Salutis
Texto Completo: https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008
Resumo: Through in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.
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spelling In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccinePredição in silico de epítopos antigênicos para produção de uma vacina humana contra leishmaniose visceralBioinformáticaImunógenoLeishmania infantumBioinformaticsImmunogenLeishmania infantumThrough in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Por meio de análises in silico, procurou-se identificar e selecionar epítopos de Leishmania infantum potencialmente capazes de disparar resposta imunogênica para elaboração de uma vacina comercial contra a leishmaniose visceral humana. Realizou-se a seleção de sequências para obtenção de um banco de dados específico e, posteriormente, analisou-se a similaridade genética com complexo de espécies causadoras de Leishmaniose Visceral (LV). Foram selecionadas sequências de interesse de L. infantum. Em seguida, fez-se a predição de estrutura secundária das sequências proteicas e a obtenção de epítopos reconhecidos por célula B juntamente com sua predição de afinidade de epítopos por MHC de classe II. Após esse processo, fez-se a modelagem de estrutura terciaria das proteínas para análise do modelo proteico gerado. Observou-se, pela análise in silico, as proteínas desejáveis, e a partir de suas estruturas tridimensionais, foi possível chegar na predição dos epítopos conformacionais. Destaca-se, ainda, que a confiabilidade destes resultados carecem de experimentos em bancadas.Sustenere Publishing2019-09-19info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.000810.6008/CBPC2236-9600.2019.001.0008Scire Salutis; Vol. 9 No. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71Scire Salutis; Vol. 9 Núm. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71Scire Salutis; v. 9 n. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-712236-9600reponame:Scire Salutisinstname:Companhia Brasileira de Produção Científica (CBPC)instacron:ESSporhttps://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008/1551Copyright (c) 2019 Scire Salutisinfo:eu-repo/semantics/openAccessMacedo Junior, Lafayete Modesto deMelo, Tuane FerreiraPeconick, Ana Paula2020-01-08T10:56:34Zoai:ojs.pkp.sfu.ca:article/3320Revistahttps://sustenere.co/index.php/sciresalutisONGhttps://sustenere.co/index.php/sciresalutis/oai||carlos@arvore.org.br2236-96002236-9600opendoar:2020-01-08T10:56:34Scire Salutis - Companhia Brasileira de Produção Científica (CBPC)false
dc.title.none.fl_str_mv In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
Predição in silico de epítopos antigênicos para produção de uma vacina humana contra leishmaniose visceral
title In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
spellingShingle In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
Macedo Junior, Lafayete Modesto de
Bioinformática
Imunógeno
Leishmania infantum
Bioinformatics
Immunogen
Leishmania infantum
title_short In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
title_full In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
title_fullStr In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
title_full_unstemmed In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
title_sort In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
author Macedo Junior, Lafayete Modesto de
author_facet Macedo Junior, Lafayete Modesto de
Melo, Tuane Ferreira
Peconick, Ana Paula
author_role author
author2 Melo, Tuane Ferreira
Peconick, Ana Paula
author2_role author
author
dc.contributor.author.fl_str_mv Macedo Junior, Lafayete Modesto de
Melo, Tuane Ferreira
Peconick, Ana Paula
dc.subject.por.fl_str_mv Bioinformática
Imunógeno
Leishmania infantum
Bioinformatics
Immunogen
Leishmania infantum
topic Bioinformática
Imunógeno
Leishmania infantum
Bioinformatics
Immunogen
Leishmania infantum
description Through in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.
publishDate 2019
dc.date.none.fl_str_mv 2019-09-19
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008
10.6008/CBPC2236-9600.2019.001.0008
url https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008
identifier_str_mv 10.6008/CBPC2236-9600.2019.001.0008
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008/1551
dc.rights.driver.fl_str_mv Copyright (c) 2019 Scire Salutis
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2019 Scire Salutis
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Sustenere Publishing
publisher.none.fl_str_mv Sustenere Publishing
dc.source.none.fl_str_mv Scire Salutis; Vol. 9 No. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71
Scire Salutis; Vol. 9 Núm. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71
Scire Salutis; v. 9 n. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71
2236-9600
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instname:Companhia Brasileira de Produção Científica (CBPC)
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reponame_str Scire Salutis
collection Scire Salutis
repository.name.fl_str_mv Scire Salutis - Companhia Brasileira de Produção Científica (CBPC)
repository.mail.fl_str_mv ||carlos@arvore.org.br
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