In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine
Autor(a) principal: | |
---|---|
Data de Publicação: | 2019 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | por |
Título da fonte: | Scire Salutis |
Texto Completo: | https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008 |
Resumo: | Through in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches. |
id |
ESS-1_be1873ec25aaeae982b682e611c301ae |
---|---|
oai_identifier_str |
oai:ojs.pkp.sfu.ca:article/3320 |
network_acronym_str |
ESS-1 |
network_name_str |
Scire Salutis |
repository_id_str |
|
spelling |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccinePredição in silico de epítopos antigênicos para produção de uma vacina humana contra leishmaniose visceralBioinformáticaImunógenoLeishmania infantumBioinformaticsImmunogenLeishmania infantumThrough in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Por meio de análises in silico, procurou-se identificar e selecionar epítopos de Leishmania infantum potencialmente capazes de disparar resposta imunogênica para elaboração de uma vacina comercial contra a leishmaniose visceral humana. Realizou-se a seleção de sequências para obtenção de um banco de dados específico e, posteriormente, analisou-se a similaridade genética com complexo de espécies causadoras de Leishmaniose Visceral (LV). Foram selecionadas sequências de interesse de L. infantum. Em seguida, fez-se a predição de estrutura secundária das sequências proteicas e a obtenção de epítopos reconhecidos por célula B juntamente com sua predição de afinidade de epítopos por MHC de classe II. Após esse processo, fez-se a modelagem de estrutura terciaria das proteínas para análise do modelo proteico gerado. Observou-se, pela análise in silico, as proteínas desejáveis, e a partir de suas estruturas tridimensionais, foi possível chegar na predição dos epítopos conformacionais. Destaca-se, ainda, que a confiabilidade destes resultados carecem de experimentos em bancadas.Sustenere Publishing2019-09-19info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.000810.6008/CBPC2236-9600.2019.001.0008Scire Salutis; Vol. 9 No. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71Scire Salutis; Vol. 9 Núm. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71Scire Salutis; v. 9 n. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-712236-9600reponame:Scire Salutisinstname:Companhia Brasileira de Produção Científica (CBPC)instacron:ESSporhttps://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008/1551Copyright (c) 2019 Scire Salutisinfo:eu-repo/semantics/openAccessMacedo Junior, Lafayete Modesto deMelo, Tuane FerreiraPeconick, Ana Paula2020-01-08T10:56:34Zoai:ojs.pkp.sfu.ca:article/3320Revistahttps://sustenere.co/index.php/sciresalutisONGhttps://sustenere.co/index.php/sciresalutis/oai||carlos@arvore.org.br2236-96002236-9600opendoar:2020-01-08T10:56:34Scire Salutis - Companhia Brasileira de Produção Científica (CBPC)false |
dc.title.none.fl_str_mv |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine Predição in silico de epítopos antigênicos para produção de uma vacina humana contra leishmaniose visceral |
title |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
spellingShingle |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine Macedo Junior, Lafayete Modesto de Bioinformática Imunógeno Leishmania infantum Bioinformatics Immunogen Leishmania infantum |
title_short |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
title_full |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
title_fullStr |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
title_full_unstemmed |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
title_sort |
In silico prediction of antigenic epitopes for the production of a human visceral leishmaniasis vaccine |
author |
Macedo Junior, Lafayete Modesto de |
author_facet |
Macedo Junior, Lafayete Modesto de Melo, Tuane Ferreira Peconick, Ana Paula |
author_role |
author |
author2 |
Melo, Tuane Ferreira Peconick, Ana Paula |
author2_role |
author author |
dc.contributor.author.fl_str_mv |
Macedo Junior, Lafayete Modesto de Melo, Tuane Ferreira Peconick, Ana Paula |
dc.subject.por.fl_str_mv |
Bioinformática Imunógeno Leishmania infantum Bioinformatics Immunogen Leishmania infantum |
topic |
Bioinformática Imunógeno Leishmania infantum Bioinformatics Immunogen Leishmania infantum |
description |
Through in silico analyzes we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and subsequently, the genetic similarity with the complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L.infantum were selected. He then predicted secondary structure of the protein sequences and obtained B cell recognized epitopes along with his prediction of MHC class II epitope affinity. After this process, the tertiary protein structure was modeled for analysis of the generated protein model. It was observed by in silico analysis the desirable proteins and from their three-dimensional structures it was possible to arrive at the prediction of conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches.Through in silico analyzes, we sought to identify and select Leishmania infantum epitopes potentially capable of triggering an immunogenic response to develop a commercial vaccine against human visceral leishmaniasis. Sequences were selected to obtain a specific database and, afterwards, the genetic similarity with a complex of species causing Visceral Leishmaniasis (LV) was analyzed. Sequences of interest of L. infantum were selected. Secondary structure prediction of protein sequences and B cell recognized epitopes were predicted along with their prediction of MHC class II epitope affinity. After this process, the tertiary protein structure modeling was performed to analyze the generated protein model. By in silico analysis, the desirable proteins were observed, and from their three-dimensional structures, it was possible to predict the conformational epitopes. It is also noteworthy that the reliability of these results require experiments on benches. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-09-19 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008 10.6008/CBPC2236-9600.2019.001.0008 |
url |
https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008 |
identifier_str_mv |
10.6008/CBPC2236-9600.2019.001.0008 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.none.fl_str_mv |
https://sustenere.inf.br/index.php/sciresalutis/article/view/CBPC2236-9600.2019.001.0008/1551 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2019 Scire Salutis info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2019 Scire Salutis |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Sustenere Publishing |
publisher.none.fl_str_mv |
Sustenere Publishing |
dc.source.none.fl_str_mv |
Scire Salutis; Vol. 9 No. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71 Scire Salutis; Vol. 9 Núm. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71 Scire Salutis; v. 9 n. 1 (2019): Scire Salutis - Out, Nov, Dez 2018, Jan 2019; 62-71 2236-9600 reponame:Scire Salutis instname:Companhia Brasileira de Produção Científica (CBPC) instacron:ESS |
instname_str |
Companhia Brasileira de Produção Científica (CBPC) |
instacron_str |
ESS |
institution |
ESS |
reponame_str |
Scire Salutis |
collection |
Scire Salutis |
repository.name.fl_str_mv |
Scire Salutis - Companhia Brasileira de Produção Científica (CBPC) |
repository.mail.fl_str_mv |
||carlos@arvore.org.br |
_version_ |
1793890277796085760 |