Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques

Detalhes bibliográficos
Autor(a) principal: Gomes,Danilo Araújo
Data de Publicação: 2021
Outros Autores: Maciel,Gabriel Mascarenhas, Siquieroli,Ana Carolina Silva, Oliveira,Camila Soares de, Finzi,Rafael Resende, Marques,Douglas José
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Bragantia
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052021000100246
Resumo: ABSTRACT The aim of this study was to estimate genetic divergence and select BC1F3 populations of dwarf tomato plant within the Santa Cruz segment by computational intelligence techniques. The experiment was conducted in a greenhouse in the Vegetable Crop Experimental Station of the Universidade Federal de Uberlândia (UFU), Monte Carmelo, MG, Brazil. A randomized block experimental design was used with 17 treatments and four replications. The genetic material evaluated comprised thirteen dwarf tomato plant populations obtained by a backcross and two self-fertilizations, plus both parents (recurrent and donor), and two commercial check varieties. The traits evaluated were mean fruit weight (MFW), soluble solids content (SSC), fruit diameter (FD), fruit length (FL), fruit shape (FS), pulp thickness (PT), number of locules (NL), distance between internodes, and acylsugar, β-carotene, and lycopene content. The data were analyzed by means testing, and genetic divergence was measured using Mahalanobis generalized distance by the unweighted pair group method with arithmetic mean (UPGMA) and through computational intelligence using Kohonen self-organizing maps (SOM). Genetic dissimilarity in relation to the donor parent could be confirmed through both methodologies. However, the SOM was able to detect differences and organize the similarities among the populations in a more consistent manner, resulting in a larger number of groups. In addition, the computational intelligence techniques allow the weight of each variable in formation of the groups to be ascertained. Among the BC1F3 populations, UFU-SC#3 and UFU-SC#5 stood out for agronomic traits, and UFU-SC#10 and UFU-SC#11 stood out for quality parameters.
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spelling Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniquesSolanum lycopersicumdwarfismneural networksKohonen self-organizing mapsABSTRACT The aim of this study was to estimate genetic divergence and select BC1F3 populations of dwarf tomato plant within the Santa Cruz segment by computational intelligence techniques. The experiment was conducted in a greenhouse in the Vegetable Crop Experimental Station of the Universidade Federal de Uberlândia (UFU), Monte Carmelo, MG, Brazil. A randomized block experimental design was used with 17 treatments and four replications. The genetic material evaluated comprised thirteen dwarf tomato plant populations obtained by a backcross and two self-fertilizations, plus both parents (recurrent and donor), and two commercial check varieties. The traits evaluated were mean fruit weight (MFW), soluble solids content (SSC), fruit diameter (FD), fruit length (FL), fruit shape (FS), pulp thickness (PT), number of locules (NL), distance between internodes, and acylsugar, β-carotene, and lycopene content. The data were analyzed by means testing, and genetic divergence was measured using Mahalanobis generalized distance by the unweighted pair group method with arithmetic mean (UPGMA) and through computational intelligence using Kohonen self-organizing maps (SOM). Genetic dissimilarity in relation to the donor parent could be confirmed through both methodologies. However, the SOM was able to detect differences and organize the similarities among the populations in a more consistent manner, resulting in a larger number of groups. In addition, the computational intelligence techniques allow the weight of each variable in formation of the groups to be ascertained. Among the BC1F3 populations, UFU-SC#3 and UFU-SC#5 stood out for agronomic traits, and UFU-SC#10 and UFU-SC#11 stood out for quality parameters.Instituto Agronômico de Campinas2021-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052021000100246Bragantia v.80 2021reponame:Bragantiainstname:Instituto Agronômico de Campinas (IAC)instacron:IAC10.1590/1678-4499.20210046info:eu-repo/semantics/openAccessGomes,Danilo AraújoMaciel,Gabriel MascarenhasSiquieroli,Ana Carolina SilvaOliveira,Camila Soares deFinzi,Rafael ResendeMarques,Douglas Joséeng2021-08-31T00:00:00Zoai:scielo:S0006-87052021000100246Revistahttps://www.scielo.br/j/brag/https://old.scielo.br/oai/scielo-oai.phpbragantia@iac.sp.gov.br||bragantia@iac.sp.gov.br1678-44990006-8705opendoar:2021-08-31T00:00Bragantia - Instituto Agronômico de Campinas (IAC)false
dc.title.none.fl_str_mv Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
title Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
spellingShingle Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
Gomes,Danilo Araújo
Solanum lycopersicum
dwarfism
neural networks
Kohonen self-organizing maps
title_short Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
title_full Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
title_fullStr Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
title_full_unstemmed Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
title_sort Selection of BC1F3 populations of Santa Cruz type dwarf tomato plant by computational intelligence techniques
author Gomes,Danilo Araújo
author_facet Gomes,Danilo Araújo
Maciel,Gabriel Mascarenhas
Siquieroli,Ana Carolina Silva
Oliveira,Camila Soares de
Finzi,Rafael Resende
Marques,Douglas José
author_role author
author2 Maciel,Gabriel Mascarenhas
Siquieroli,Ana Carolina Silva
Oliveira,Camila Soares de
Finzi,Rafael Resende
Marques,Douglas José
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Gomes,Danilo Araújo
Maciel,Gabriel Mascarenhas
Siquieroli,Ana Carolina Silva
Oliveira,Camila Soares de
Finzi,Rafael Resende
Marques,Douglas José
dc.subject.por.fl_str_mv Solanum lycopersicum
dwarfism
neural networks
Kohonen self-organizing maps
topic Solanum lycopersicum
dwarfism
neural networks
Kohonen self-organizing maps
description ABSTRACT The aim of this study was to estimate genetic divergence and select BC1F3 populations of dwarf tomato plant within the Santa Cruz segment by computational intelligence techniques. The experiment was conducted in a greenhouse in the Vegetable Crop Experimental Station of the Universidade Federal de Uberlândia (UFU), Monte Carmelo, MG, Brazil. A randomized block experimental design was used with 17 treatments and four replications. The genetic material evaluated comprised thirteen dwarf tomato plant populations obtained by a backcross and two self-fertilizations, plus both parents (recurrent and donor), and two commercial check varieties. The traits evaluated were mean fruit weight (MFW), soluble solids content (SSC), fruit diameter (FD), fruit length (FL), fruit shape (FS), pulp thickness (PT), number of locules (NL), distance between internodes, and acylsugar, β-carotene, and lycopene content. The data were analyzed by means testing, and genetic divergence was measured using Mahalanobis generalized distance by the unweighted pair group method with arithmetic mean (UPGMA) and through computational intelligence using Kohonen self-organizing maps (SOM). Genetic dissimilarity in relation to the donor parent could be confirmed through both methodologies. However, the SOM was able to detect differences and organize the similarities among the populations in a more consistent manner, resulting in a larger number of groups. In addition, the computational intelligence techniques allow the weight of each variable in formation of the groups to be ascertained. Among the BC1F3 populations, UFU-SC#3 and UFU-SC#5 stood out for agronomic traits, and UFU-SC#10 and UFU-SC#11 stood out for quality parameters.
publishDate 2021
dc.date.none.fl_str_mv 2021-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052021000100246
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052021000100246
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-4499.20210046
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Instituto Agronômico de Campinas
publisher.none.fl_str_mv Instituto Agronômico de Campinas
dc.source.none.fl_str_mv Bragantia v.80 2021
reponame:Bragantia
instname:Instituto Agronômico de Campinas (IAC)
instacron:IAC
instname_str Instituto Agronômico de Campinas (IAC)
instacron_str IAC
institution IAC
reponame_str Bragantia
collection Bragantia
repository.name.fl_str_mv Bragantia - Instituto Agronômico de Campinas (IAC)
repository.mail.fl_str_mv bragantia@iac.sp.gov.br||bragantia@iac.sp.gov.br
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