Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
Texto Completo: | https://patua.iec.gov.br/handle/iec/3933 |
Resumo: | The International Committee on Taxonomy of Viruses (ICTV) is tasked with classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and virus name abbreviations are currently not within the ICTV's official remit and are not regulated by an official entity. Many scientists, medical/veterinary professionals, and regulatory agencies do not address evolutionary questions nor are they concerned with the hierarchical organization of the viral world, and therefore, have limited use for ICTV-devised taxa. Instead, these professionals look to the ICTV as an expert point source that provides the most current taxonomic affiliations of viruses of interests to facilitate document writing. These needs are currently unmet as an ICTV-supported, easily searchable database that includes all published virus names and abbreviations linked to their taxa is not available. In addition, in stark contrast to other biological taxonomic frameworks, virus taxonomy currently permits individual species to have several members. Consequently, confusion emerges among those who are not aware of the difference between taxa and viruses, and because certain well-known viruses cannot be located in ICTV publications or be linked to their species. In addition, the number of duplicate names and abbreviations has increased dramatically in the literature. To solve this conundrum, the ICTV could mandate listing all viruses of established species and all reported unclassified viruses in forthcoming online ICTV Reports and create a searchable webpage using this information. The International Union of Microbiology Societies could also consider changing the mandate of the ICTV to include the nomenclature of all viruses in addition to taxon considerations. With such a mandate expansion, official virus names and virus name abbreviations could be catalogued and virus nomenclature could be standardized. As a result, the ICTV would become an even more useful resource for all stakeholders in virology. |
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Calisher, Charles HBriese, ThomasBrister, J. RodneyCharrel, Rémi NDurrwald, RalfEbihara, HidekiFulhorst, Charles FGão, George FúGroschup, Martin HHaddow, Andrew DHyndman, Timothy HJunglen, SandraKlempa, BorisKlingstrom, JonasKropinski, Andrew MKrupovic, MartLa Beaud, A. DesireeMaes, PietNowotny, NorbertNunes, Márcio Roberto TeixeiraPayne, Susan LRadoshitzky, Sheli RRubbenstroth, DennisSabanadzovic, SeadSasaya, TakahideStenglein, Mark DVarsani, ArvindWahl, VictoriaWeaver, Scott CZerbini, Francisco MuriloVasilakis, NikosHuhn, Jens H2019-09-25T14:22:36Z2019-09-25T14:22:36Z2019CALISHER, Charles H. et al. Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species. Systematic Biology, v. 68, n. 8, p. 828-839, 2019.1076-836Xhttps://patua.iec.gov.br/handle/iec/393310.1093/sysbio/syy087.The International Committee on Taxonomy of Viruses (ICTV) is tasked with classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and virus name abbreviations are currently not within the ICTV's official remit and are not regulated by an official entity. Many scientists, medical/veterinary professionals, and regulatory agencies do not address evolutionary questions nor are they concerned with the hierarchical organization of the viral world, and therefore, have limited use for ICTV-devised taxa. Instead, these professionals look to the ICTV as an expert point source that provides the most current taxonomic affiliations of viruses of interests to facilitate document writing. These needs are currently unmet as an ICTV-supported, easily searchable database that includes all published virus names and abbreviations linked to their taxa is not available. In addition, in stark contrast to other biological taxonomic frameworks, virus taxonomy currently permits individual species to have several members. Consequently, confusion emerges among those who are not aware of the difference between taxa and viruses, and because certain well-known viruses cannot be located in ICTV publications or be linked to their species. In addition, the number of duplicate names and abbreviations has increased dramatically in the literature. To solve this conundrum, the ICTV could mandate listing all viruses of established species and all reported unclassified viruses in forthcoming online ICTV Reports and create a searchable webpage using this information. The International Union of Microbiology Societies could also consider changing the mandate of the ICTV to include the nomenclature of all viruses in addition to taxon considerations. With such a mandate expansion, official virus names and virus name abbreviations could be catalogued and virus nomenclature could be standardized. As a result, the ICTV would become an even more useful resource for all stakeholders in virology.This work was supported by Battelle Memorial Institute’s prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272200700016I (J.H.K.), by US National Institutes of Health (NIH) grant R24 AI120942 (S.C.W and N.V.), and by the Intramural Research Program of the NIH, National Library of Medicine (J.R.B.). S.S. acknowledges support from Mississippi State University (MSU)—Mississippi Agricultural and Forestry Experiment Station (MAFES) Strategic Research Initiative grants. This work was also funded in part under ContractNo. HSHQDC-15-C-00064 awarded by DHS S&T for the management and operation of the National Biodefense Analysis and Countermeasures Center (NBACC), a federally funded research and development center (V.W.)Colorado State University. College of Veterinary Medicine and Biomedical Sciences. Department of Microbiology, Immunology and Pathology. Arthropod-borne and Infectious Diseases Laboratory. Fort Collins, CO, USA.Columbia University. Mailman School of Public Health. Center for Infection and Immunity. Department of Epidemiology. New York, NY, USA.National Institutes of Health. National Library of Medicine. National Center for Biotechnology. Bethesda, MD, USA.Université Aix-Marseille. Faculté de Médecine. HU Méditerranée Infection. Unité des Virus Emergents. Marseille, France.Robert Koch-Institut. Department of Infectious Diseases. Berlin, Germany.Guggenheim Building. Mayo Clinic. Department of Molecular Medicine. Rochester, MN USA.University of Texas Medical Branch. Department of Pathology. Galveston, TX, USA.Chinese Center for Disease Control and Prevention. National Institute for Viral Disease Control and Prevention. Beijing, China.Friedrich-Loeffler-Institut, Südufer. Institut für Virusdiagnostik. Greifswald-Insel Riems, Germany.United States Army Medical Research Institute of Infectious Diseases. Department of Virology. Frederick, MD, USA.Murdoch University. School of Veterinary and Life Sciences. College of Veterinary Medicine. Australia Australia.Humboldt-University Berlin. Berlin Institute of Health. Charité Universitätsmedizin Berlin. Institute of Virology. Berlin, Germany / Inhoffenstraße 7. Deutsches Zentrum für Infektionsforschung. Braunschweig, Germany.Slovenská Akadémia Vied. Biomedicínske centrum. Virologický ústav. Dúbravská, Bratislava, Slovakia.Robert Koch-Institut. Department of Infectious Diseases. Berlin, Germany.University of Guelph. Department of Food Sciencen. Guelph, Ontario, Canada / University of Guelph. Department of Pathobiology. Guelph, Ontario, Canada.Institut Pasteur. Departement of Microbiology. Paris, France.Stanford University School of Medicine. Department of Pediatrics. Division of Infectious Diseases. Stanford, CA, USA.KU Leuven. Department of Microbiology, Immunology and Transplantation. Rega Institute. Zoonotic Infectious Diseases unit. Leuven, Belgium.University of Veterinary Medicine Vienna. Department of Pathobiology. Institute of Virology. Veterinärplatz, Vienna, Austria / Mohammed Bin Rashid University of Medicine and Health Sciences. Department of Basic Medical Sciences. College of Medicine. Dubai, United Arab Emirates.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, Brasil.Texas A&M University. Veterinary Medical Sciences Building. College of Veterinary Medicine and Biomedical Sciences. Department of Veterinary Pathobiology. TX, USA.United States Army Medical Research Institute of Infectious Diseases. Molecular and Translational Sciences. Frederick, MD, USA.Friedrich-Loeffler-Institut, Südufer. Institut für Virusdiagnostik. Greifswald-Insel Riems, Germany / Universitätsklinikum Freiburg. Institut für Virologie. Freiburg, Germany.Mississippi State University. Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology. Mississippi State, MS, USA.National Agriculture and Food Research Organization. Department of Planning and Coordination. Ibaraki, Japan.Colorado State University. Department of Microbiology, Immunology and Pathology. Fort Collins, CO, USA.Arizona State University. School of Life Sciences, Center for Evolution and Medicine. The Biodesign Center for Fundamental and Applied Microbiomics. Tempe, AZ, USA.National Biodefense Analysis and Countermeasures Center. Frederick, MD, USA.University of Texas Medical Branch. Institute for Human Infections and Immunity. Department of Microbiology and Immunology. Galveston, TX, USA.Universidade Federal de Viçosa. Departamento de Fitopatologia/BIOAGRO and National Institute of Science and Technology for Plant-Pest Interactions. Viçosa, MG, Brazil.University of Texas Medical Branch. Institute for Human Infection and Immunity. Center for Tropical Diseases. Department of Pathology, Center for Biodefense and Emerging Infectious Diseases. Galveston, TX, USA.Integrated Research Facility at Fort Detrick. 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dc.title.pt_BR.fl_str_mv |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
title |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
spellingShingle |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species Calisher, Charles H Arbovirus / classificação Classificação / métodos Terminologia como Assunto |
title_short |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
title_full |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
title_fullStr |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
title_full_unstemmed |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
title_sort |
Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species |
author |
Calisher, Charles H |
author_facet |
Calisher, Charles H Briese, Thomas Brister, J. Rodney Charrel, Rémi N Durrwald, Ralf Ebihara, Hideki Fulhorst, Charles F Gão, George Fú Groschup, Martin H Haddow, Andrew D Hyndman, Timothy H Junglen, Sandra Klempa, Boris Klingstrom, Jonas Kropinski, Andrew M Krupovic, Mart La Beaud, A. Desiree Maes, Piet Nowotny, Norbert Nunes, Márcio Roberto Teixeira Payne, Susan L Radoshitzky, Sheli R Rubbenstroth, Dennis Sabanadzovic, Sead Sasaya, Takahide Stenglein, Mark D Varsani, Arvind Wahl, Victoria Weaver, Scott C Zerbini, Francisco Murilo Vasilakis, Nikos Huhn, Jens H |
author_role |
author |
author2 |
Briese, Thomas Brister, J. Rodney Charrel, Rémi N Durrwald, Ralf Ebihara, Hideki Fulhorst, Charles F Gão, George Fú Groschup, Martin H Haddow, Andrew D Hyndman, Timothy H Junglen, Sandra Klempa, Boris Klingstrom, Jonas Kropinski, Andrew M Krupovic, Mart La Beaud, A. Desiree Maes, Piet Nowotny, Norbert Nunes, Márcio Roberto Teixeira Payne, Susan L Radoshitzky, Sheli R Rubbenstroth, Dennis Sabanadzovic, Sead Sasaya, Takahide Stenglein, Mark D Varsani, Arvind Wahl, Victoria Weaver, Scott C Zerbini, Francisco Murilo Vasilakis, Nikos Huhn, Jens H |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Calisher, Charles H Briese, Thomas Brister, J. Rodney Charrel, Rémi N Durrwald, Ralf Ebihara, Hideki Fulhorst, Charles F Gão, George Fú Groschup, Martin H Haddow, Andrew D Hyndman, Timothy H Junglen, Sandra Klempa, Boris Klingstrom, Jonas Kropinski, Andrew M Krupovic, Mart La Beaud, A. Desiree Maes, Piet Nowotny, Norbert Nunes, Márcio Roberto Teixeira Payne, Susan L Radoshitzky, Sheli R Rubbenstroth, Dennis Sabanadzovic, Sead Sasaya, Takahide Stenglein, Mark D Varsani, Arvind Wahl, Victoria Weaver, Scott C Zerbini, Francisco Murilo Vasilakis, Nikos Huhn, Jens H |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Arbovirus / classificação Classificação / métodos Terminologia como Assunto |
topic |
Arbovirus / classificação Classificação / métodos Terminologia como Assunto |
description |
The International Committee on Taxonomy of Viruses (ICTV) is tasked with classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and virus name abbreviations are currently not within the ICTV's official remit and are not regulated by an official entity. Many scientists, medical/veterinary professionals, and regulatory agencies do not address evolutionary questions nor are they concerned with the hierarchical organization of the viral world, and therefore, have limited use for ICTV-devised taxa. Instead, these professionals look to the ICTV as an expert point source that provides the most current taxonomic affiliations of viruses of interests to facilitate document writing. These needs are currently unmet as an ICTV-supported, easily searchable database that includes all published virus names and abbreviations linked to their taxa is not available. In addition, in stark contrast to other biological taxonomic frameworks, virus taxonomy currently permits individual species to have several members. Consequently, confusion emerges among those who are not aware of the difference between taxa and viruses, and because certain well-known viruses cannot be located in ICTV publications or be linked to their species. In addition, the number of duplicate names and abbreviations has increased dramatically in the literature. To solve this conundrum, the ICTV could mandate listing all viruses of established species and all reported unclassified viruses in forthcoming online ICTV Reports and create a searchable webpage using this information. The International Union of Microbiology Societies could also consider changing the mandate of the ICTV to include the nomenclature of all viruses in addition to taxon considerations. With such a mandate expansion, official virus names and virus name abbreviations could be catalogued and virus nomenclature could be standardized. As a result, the ICTV would become an even more useful resource for all stakeholders in virology. |
publishDate |
2019 |
dc.date.accessioned.fl_str_mv |
2019-09-25T14:22:36Z |
dc.date.available.fl_str_mv |
2019-09-25T14:22:36Z |
dc.date.issued.fl_str_mv |
2019 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
CALISHER, Charles H. et al. Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species. Systematic Biology, v. 68, n. 8, p. 828-839, 2019. |
dc.identifier.uri.fl_str_mv |
https://patua.iec.gov.br/handle/iec/3933 |
dc.identifier.issn.-.fl_str_mv |
1076-836X |
dc.identifier.doi.-.fl_str_mv |
10.1093/sysbio/syy087. |
identifier_str_mv |
CALISHER, Charles H. et al. Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations to virus species. Systematic Biology, v. 68, n. 8, p. 828-839, 2019. 1076-836X 10.1093/sysbio/syy087. |
url |
https://patua.iec.gov.br/handle/iec/3933 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
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IEC |
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collection |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
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Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC) |
repository.mail.fl_str_mv |
clariceneta@iec.gov.br || Biblioteca@iec.gov.br |
_version_ |
1787533065208201216 |