A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes)
Autor(a) principal: | |
---|---|
Data de Publicação: | 2020 |
Outros Autores: | , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
Texto Completo: | https://patua.iec.gov.br/handle/iec/4097 |
Resumo: | The Columbidae species (Aves, Columbiformes) show considerable variation in their diploid numbers (2n = 68−86), but there is limited understanding of the events that shaped the extant karyotypes. Hence, we performed whole chromosome painting (wcp) for paints GGA1-10 and bacterial artificial chromosome (BAC) probes for chromosomes GGA11-28 for Columbina passerina, Columbina talpacoti, Patagioenas cayennensis, Geotrygon violacea and Geotrygon montana. Streptopelia decaocto was only investigated with paints because BACs for GGA10-28 had been previously analyzed. We also performed phylogenetic analyses in order to trace the evolutionary history of this family in light of chromosomal changes using our wcp data with chicken probes and from Zenaida auriculata, Columbina picui, Columba livia and Leptotila verreauxi, previously published. G-banding was performed on all these species. Comparative chromosome paint and G-banding results suggested that at least one interchromosomal and many intrachromosomal rearrangements had occurred in the diversification of Columbidae species. On the other hand, a high degree of conservation of microchromosome organization was observed in these species. Our cladistic analysis, considering all the chromosome rearrangements detected, provided strong support for L. verreauxi and P. cayennensis, G. montana and G. violacea, C. passerina and C. talpacoti having sister taxa relationships, as well as for all Columbidae species analyzed herein. Additionally, the chromosome characters were mapped in a consensus phylogenetic topology previously proposed, revealing a pericentric inversion in the chromosome homologous to GGA4 in a chromosomal signature unique to small New World ground doves. |
id |
IEC-2_7ac87406c9bf8f7eaecfa2d8c6dbcf62 |
---|---|
oai_identifier_str |
oai:patua.iec.gov.br:iec/4097 |
network_acronym_str |
IEC-2 |
network_name_str |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
repository_id_str |
|
spelling |
Kretschmer, RafaelFuro, Ivanete de OliveiraGomes, Anderson José BaiaKiazim, Lucas GGunski, Ricardo JoséGarnero, Analía del VallePereira, Jorge CFerguson-Smith, Malcolm AOliveira, Edivaldo Herculano Corrêa deGriffin, Darren KFreitas, Thales Renato Ochotorena deO'Connor, Rebecca E2020-06-20T20:34:52Z2020-06-20T20:34:52Z2020KRETSCHMER, Rafael et al. A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes). Genes, v. 11, n. 6, e632, June 2020.2073-4425https://patua.iec.gov.br/handle/iec/409710.3390/genes11060632The Columbidae species (Aves, Columbiformes) show considerable variation in their diploid numbers (2n = 68−86), but there is limited understanding of the events that shaped the extant karyotypes. Hence, we performed whole chromosome painting (wcp) for paints GGA1-10 and bacterial artificial chromosome (BAC) probes for chromosomes GGA11-28 for Columbina passerina, Columbina talpacoti, Patagioenas cayennensis, Geotrygon violacea and Geotrygon montana. Streptopelia decaocto was only investigated with paints because BACs for GGA10-28 had been previously analyzed. We also performed phylogenetic analyses in order to trace the evolutionary history of this family in light of chromosomal changes using our wcp data with chicken probes and from Zenaida auriculata, Columbina picui, Columba livia and Leptotila verreauxi, previously published. G-banding was performed on all these species. Comparative chromosome paint and G-banding results suggested that at least one interchromosomal and many intrachromosomal rearrangements had occurred in the diversification of Columbidae species. On the other hand, a high degree of conservation of microchromosome organization was observed in these species. Our cladistic analysis, considering all the chromosome rearrangements detected, provided strong support for L. verreauxi and P. cayennensis, G. montana and G. violacea, C. passerina and C. talpacoti having sister taxa relationships, as well as for all Columbidae species analyzed herein. Additionally, the chromosome characters were mapped in a consensus phylogenetic topology previously proposed, revealing a pericentric inversion in the chromosome homologous to GGA4 in a chromosomal signature unique to small New World ground doves.This study was supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, Proc. PDE 204792/2018-5), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES, Proc. PDSE 88881.132814/2016-01), Fundação de Amparo a Pesquisa do Estado do Rio Grande do Sul (FAPERGS, 16/2551-000485-7), Fundação para a Ciência e Tecnologia (FCT, UIDB/CVT/00772/2020) and the Biotechnology and Biological Sciences Research Council UK [BB/K008226/1].University of Kent. School of Biosciences. Canterbury, UK / Universidade Federal do Rio Grande do Sul. Departamento de Genética. Porto Alegre, RS, Brazil.Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Instituto Federal do Pará. Abaetetuba, PA, Brazil.University of Kent. School of Biosciences. Canterbury, UK.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.University of Trás-os-Montes and Alto Douro. Animal and Veterinary Research Centre. Vila Real, Portugal.University of Cambridge. Department of Veterinary Medicine. Cambridge Resource Centre for Comparative Genomics. Cambridge, UK.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém, PA, Brazil.University of Kent. School of Biosciences. Canterbury, UK.Universidade Federal do Rio Grande do Sul. Departamento de Genética. Porto Alegre, RS, Brazil.University of Kent. School of Biosciences. Canterbury, UK.engMDPIA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleColumbidae / anatomia & histologiaColumbidae / genéticaAves / genéticaColoração Cromossômica / métodosEvolução MolecularCromossomos / genéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdfA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdfapplication/pdf3976565https://patua.iec.gov.br/bitstreams/85043c6f-3140-4335-b70e-8c283446f35d/downloade76fb0142fe366886afa0ea41a814db1MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/f461c3fb-bd25-40ca-9963-4a9bd07eebe2/download11832eea31b16df8613079d742d61793MD52TEXTA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdf.txtA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdf.txtExtracted texttext/plain67626https://patua.iec.gov.br/bitstreams/abd5605e-30cb-4184-b650-23481c7e8f58/downloadce388e4d9d64b88b323d584a3e51c5fdMD55THUMBNAILA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdf.jpgA comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes).pdf.jpgGenerated Thumbnailimage/jpeg5455https://patua.iec.gov.br/bitstreams/bede3673-6545-47e1-8fbb-15940d018af9/download5f4ec069772eae5a3b67478038e82f01MD56iec/40972022-10-20 22:34:26.395oai:patua.iec.gov.br:iec/4097https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T22:34:26Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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 |
dc.title.pt_BR.fl_str_mv |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
title |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
spellingShingle |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) Kretschmer, Rafael Columbidae / anatomia & histologia Columbidae / genética Aves / genética Coloração Cromossômica / métodos Evolução Molecular Cromossomos / genética |
title_short |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
title_full |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
title_fullStr |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
title_full_unstemmed |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
title_sort |
A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes) |
author |
Kretschmer, Rafael |
author_facet |
Kretschmer, Rafael Furo, Ivanete de Oliveira Gomes, Anderson José Baia Kiazim, Lucas G Gunski, Ricardo José Garnero, Analía del Valle Pereira, Jorge C Ferguson-Smith, Malcolm A Oliveira, Edivaldo Herculano Corrêa de Griffin, Darren K Freitas, Thales Renato Ochotorena de O'Connor, Rebecca E |
author_role |
author |
author2 |
Furo, Ivanete de Oliveira Gomes, Anderson José Baia Kiazim, Lucas G Gunski, Ricardo José Garnero, Analía del Valle Pereira, Jorge C Ferguson-Smith, Malcolm A Oliveira, Edivaldo Herculano Corrêa de Griffin, Darren K Freitas, Thales Renato Ochotorena de O'Connor, Rebecca E |
author2_role |
author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Kretschmer, Rafael Furo, Ivanete de Oliveira Gomes, Anderson José Baia Kiazim, Lucas G Gunski, Ricardo José Garnero, Analía del Valle Pereira, Jorge C Ferguson-Smith, Malcolm A Oliveira, Edivaldo Herculano Corrêa de Griffin, Darren K Freitas, Thales Renato Ochotorena de O'Connor, Rebecca E |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Columbidae / anatomia & histologia Columbidae / genética Aves / genética Coloração Cromossômica / métodos Evolução Molecular Cromossomos / genética |
topic |
Columbidae / anatomia & histologia Columbidae / genética Aves / genética Coloração Cromossômica / métodos Evolução Molecular Cromossomos / genética |
description |
The Columbidae species (Aves, Columbiformes) show considerable variation in their diploid numbers (2n = 68−86), but there is limited understanding of the events that shaped the extant karyotypes. Hence, we performed whole chromosome painting (wcp) for paints GGA1-10 and bacterial artificial chromosome (BAC) probes for chromosomes GGA11-28 for Columbina passerina, Columbina talpacoti, Patagioenas cayennensis, Geotrygon violacea and Geotrygon montana. Streptopelia decaocto was only investigated with paints because BACs for GGA10-28 had been previously analyzed. We also performed phylogenetic analyses in order to trace the evolutionary history of this family in light of chromosomal changes using our wcp data with chicken probes and from Zenaida auriculata, Columbina picui, Columba livia and Leptotila verreauxi, previously published. G-banding was performed on all these species. Comparative chromosome paint and G-banding results suggested that at least one interchromosomal and many intrachromosomal rearrangements had occurred in the diversification of Columbidae species. On the other hand, a high degree of conservation of microchromosome organization was observed in these species. Our cladistic analysis, considering all the chromosome rearrangements detected, provided strong support for L. verreauxi and P. cayennensis, G. montana and G. violacea, C. passerina and C. talpacoti having sister taxa relationships, as well as for all Columbidae species analyzed herein. Additionally, the chromosome characters were mapped in a consensus phylogenetic topology previously proposed, revealing a pericentric inversion in the chromosome homologous to GGA4 in a chromosomal signature unique to small New World ground doves. |
publishDate |
2020 |
dc.date.accessioned.fl_str_mv |
2020-06-20T20:34:52Z |
dc.date.available.fl_str_mv |
2020-06-20T20:34:52Z |
dc.date.issued.fl_str_mv |
2020 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
KRETSCHMER, Rafael et al. A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes). Genes, v. 11, n. 6, e632, June 2020. |
dc.identifier.uri.fl_str_mv |
https://patua.iec.gov.br/handle/iec/4097 |
dc.identifier.issn.-.fl_str_mv |
2073-4425 |
dc.identifier.doi.-.fl_str_mv |
10.3390/genes11060632 |
identifier_str_mv |
KRETSCHMER, Rafael et al. A comprehensive cytogenetic analysis of several members of the family columbidae (Aves, columbiformes). Genes, v. 11, n. 6, e632, June 2020. 2073-4425 10.3390/genes11060632 |
url |
https://patua.iec.gov.br/handle/iec/4097 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
MDPI |
publisher.none.fl_str_mv |
MDPI |
dc.source.none.fl_str_mv |
reponame:Repositório Digital do Instituto Evandro Chagas (Patuá) instname:Instituto Evandro Chagas (IEC) instacron:IEC |
instname_str |
Instituto Evandro Chagas (IEC) |
instacron_str |
IEC |
institution |
IEC |
reponame_str |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
collection |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
bitstream.url.fl_str_mv |
https://patua.iec.gov.br/bitstreams/85043c6f-3140-4335-b70e-8c283446f35d/download https://patua.iec.gov.br/bitstreams/f461c3fb-bd25-40ca-9963-4a9bd07eebe2/download https://patua.iec.gov.br/bitstreams/abd5605e-30cb-4184-b650-23481c7e8f58/download https://patua.iec.gov.br/bitstreams/bede3673-6545-47e1-8fbb-15940d018af9/download |
bitstream.checksum.fl_str_mv |
e76fb0142fe366886afa0ea41a814db1 11832eea31b16df8613079d742d61793 ce388e4d9d64b88b323d584a3e51c5fd 5f4ec069772eae5a3b67478038e82f01 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC) |
repository.mail.fl_str_mv |
clariceneta@iec.gov.br || Biblioteca@iec.gov.br |
_version_ |
1809190048392806400 |