Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population

Detalhes bibliográficos
Autor(a) principal: Silveira, Michele Amaral da
Data de Publicação: 2020
Outros Autores: Ferreira, Wallax Augusto Silva, Amorim, Carolina Koury Nassar, Brito, José Reginaldo Nascimento, Kayath, André Salim, Sagica, Fernanda do Espirito Santo, Oliveira, Edivaldo Herculano Corrêa de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/4145
Resumo: Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs.
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spelling Silveira, Michele Amaral daFerreira, Wallax Augusto SilvaAmorim, Carolina Koury NassarBrito, José Reginaldo NascimentoKayath, André SalimSagica, Fernanda do Espirito SantoOliveira, Edivaldo Herculano Corrêa de2020-08-17T13:04:06Z2020-08-17T13:04:06Z2020SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020.1687-8469https://patua.iec.gov.br/handle/iec/414510.1155/2020/3821695Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs.Universidade Federal do Pará. Instituto de Ciências Biológicas. Programa de Pós-Graduação em Neurociências e Biologia Celular. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Universidade Federal do Pará. Programa de Pós-Graduação em Oncologia e Ciências Médicas. Belém, PA, Brazil.Universidade Federal do Pará. Núcleo de Pesquisas Oncológicas. Belém, PA, Brazil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Faculdade de Ciências Exatas e Naturais. Belém, PA, Brazil.engHindawi Publishing CorporationMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed populationinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleSistema Nervoso Central / patologiaNeoplasiasNeoplasias MeníngeasMeningiomainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdfMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdfapplication/pdf1236470https://patua.iec.gov.br/bitstreams/77ea4939-ff40-49d1-acc5-7885314c1e28/download6b1ca0260806f57a165d677986cc5cebMD51TEXTMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.txtMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.txtExtracted texttext/plain34312https://patua.iec.gov.br/bitstreams/09450ca0-7296-42b6-bac5-5fe939dcb186/downloadaa5ee68b95d574e35be1f5dad53f0129MD55THUMBNAILMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.jpgMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.jpgGenerated Thumbnailimage/jpeg5547https://patua.iec.gov.br/bitstreams/d47e8eea-1d4e-4003-8ab9-d9934df43fd2/downloadce04369e7f2d96cf6a3159bcbd1c1fceMD56LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/51b18029-c9e4-46d1-b8f1-faed165da818/download11832eea31b16df8613079d742d61793MD52iec/41452022-10-20 21:34:49.066oai:patua.iec.gov.br:iec/4145https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T21:34:49Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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
dc.title.pt_BR.fl_str_mv Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
title Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
spellingShingle Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
Silveira, Michele Amaral da
Sistema Nervoso Central / patologia
Neoplasias
Neoplasias Meníngeas
Meningioma
title_short Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
title_full Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
title_fullStr Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
title_full_unstemmed Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
title_sort Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
author Silveira, Michele Amaral da
author_facet Silveira, Michele Amaral da
Ferreira, Wallax Augusto Silva
Amorim, Carolina Koury Nassar
Brito, José Reginaldo Nascimento
Kayath, André Salim
Sagica, Fernanda do Espirito Santo
Oliveira, Edivaldo Herculano Corrêa de
author_role author
author2 Ferreira, Wallax Augusto Silva
Amorim, Carolina Koury Nassar
Brito, José Reginaldo Nascimento
Kayath, André Salim
Sagica, Fernanda do Espirito Santo
Oliveira, Edivaldo Herculano Corrêa de
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Silveira, Michele Amaral da
Ferreira, Wallax Augusto Silva
Amorim, Carolina Koury Nassar
Brito, José Reginaldo Nascimento
Kayath, André Salim
Sagica, Fernanda do Espirito Santo
Oliveira, Edivaldo Herculano Corrêa de
dc.subject.decsPrimary.pt_BR.fl_str_mv Sistema Nervoso Central / patologia
Neoplasias
Neoplasias Meníngeas
Meningioma
topic Sistema Nervoso Central / patologia
Neoplasias
Neoplasias Meníngeas
Meningioma
description Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs.
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-08-17T13:04:06Z
dc.date.available.fl_str_mv 2020-08-17T13:04:06Z
dc.date.issued.fl_str_mv 2020
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dc.identifier.citation.fl_str_mv SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020.
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/4145
dc.identifier.issn.-.fl_str_mv 1687-8469
dc.identifier.doi.-.fl_str_mv 10.1155/2020/3821695
identifier_str_mv SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020.
1687-8469
10.1155/2020/3821695
url https://patua.iec.gov.br/handle/iec/4145
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