Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population
Autor(a) principal: | |
---|---|
Data de Publicação: | 2020 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
Texto Completo: | https://patua.iec.gov.br/handle/iec/4145 |
Resumo: | Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs. |
id |
IEC-2_cdcc996ca1583172f2de30f4dbb14c03 |
---|---|
oai_identifier_str |
oai:patua.iec.gov.br:iec/4145 |
network_acronym_str |
IEC-2 |
network_name_str |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
repository_id_str |
|
spelling |
Silveira, Michele Amaral daFerreira, Wallax Augusto SilvaAmorim, Carolina Koury NassarBrito, José Reginaldo NascimentoKayath, André SalimSagica, Fernanda do Espirito SantoOliveira, Edivaldo Herculano Corrêa de2020-08-17T13:04:06Z2020-08-17T13:04:06Z2020SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020.1687-8469https://patua.iec.gov.br/handle/iec/414510.1155/2020/3821695Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs.Universidade Federal do Pará. Instituto de Ciências Biológicas. Programa de Pós-Graduação em Neurociências e Biologia Celular. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Universidade Federal do Pará. Programa de Pós-Graduação em Oncologia e Ciências Médicas. Belém, PA, Brazil.Universidade Federal do Pará. Núcleo de Pesquisas Oncológicas. Belém, PA, Brazil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Faculdade de Ciências Exatas e Naturais. Belém, PA, Brazil.engHindawi Publishing CorporationMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed populationinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleSistema Nervoso Central / patologiaNeoplasiasNeoplasias MeníngeasMeningiomainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdfMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdfapplication/pdf1236470https://patua.iec.gov.br/bitstreams/77ea4939-ff40-49d1-acc5-7885314c1e28/download6b1ca0260806f57a165d677986cc5cebMD51TEXTMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.txtMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.txtExtracted texttext/plain34312https://patua.iec.gov.br/bitstreams/09450ca0-7296-42b6-bac5-5fe939dcb186/downloadaa5ee68b95d574e35be1f5dad53f0129MD55THUMBNAILMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.jpgMeningiomas: an overview of the landscape of copy number alterations in samples from an admixed population.pdf.jpgGenerated Thumbnailimage/jpeg5547https://patua.iec.gov.br/bitstreams/d47e8eea-1d4e-4003-8ab9-d9934df43fd2/downloadce04369e7f2d96cf6a3159bcbd1c1fceMD56LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/51b18029-c9e4-46d1-b8f1-faed165da818/download11832eea31b16df8613079d742d61793MD52iec/41452022-10-20 21:34:49.066oai:patua.iec.gov.br:iec/4145https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T21:34:49Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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 |
dc.title.pt_BR.fl_str_mv |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
title |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
spellingShingle |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population Silveira, Michele Amaral da Sistema Nervoso Central / patologia Neoplasias Neoplasias Meníngeas Meningioma |
title_short |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
title_full |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
title_fullStr |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
title_full_unstemmed |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
title_sort |
Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population |
author |
Silveira, Michele Amaral da |
author_facet |
Silveira, Michele Amaral da Ferreira, Wallax Augusto Silva Amorim, Carolina Koury Nassar Brito, José Reginaldo Nascimento Kayath, André Salim Sagica, Fernanda do Espirito Santo Oliveira, Edivaldo Herculano Corrêa de |
author_role |
author |
author2 |
Ferreira, Wallax Augusto Silva Amorim, Carolina Koury Nassar Brito, José Reginaldo Nascimento Kayath, André Salim Sagica, Fernanda do Espirito Santo Oliveira, Edivaldo Herculano Corrêa de |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Silveira, Michele Amaral da Ferreira, Wallax Augusto Silva Amorim, Carolina Koury Nassar Brito, José Reginaldo Nascimento Kayath, André Salim Sagica, Fernanda do Espirito Santo Oliveira, Edivaldo Herculano Corrêa de |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Sistema Nervoso Central / patologia Neoplasias Neoplasias Meníngeas Meningioma |
topic |
Sistema Nervoso Central / patologia Neoplasias Neoplasias Meníngeas Meningioma |
description |
Meningiomas are considered the most common intracranial tumors, affecting mainly women. Studies in mixed populations can be of great importance to clarify issues related to the genetic diversity of tumors and their development. Considering that data obtained from analyses of the profile of copy number alterations (CNA) have been a useful diagnostic indicator for many types of tumors and that meningiomas show a complex pattern of gains and losses in the number of copies, our objective was to analyze the CNA profile in 33 samples of meningiomas of different histological grades (WHO Grade I-III) from patients in a city located in the Amazon region of Brazil, using aCGH. We found that the female to male ratio was 3 :1. )e aCGH analysis revealed a total of 2304 CNA, with an average of 69.8 ± 57.4 per case, of which 1197 were gains (52%), 926 were losses (40.2%), 105 were amplifications (4. 5%), and 76 were deletions (3.3%). A significant relationship was observed between the type of CNA and the degree of the tumor (chi-square test: χ2 = 65,844; p < 0.0001; contingency coefficient: C = 0.1772; p < 0.0001). Evaluating the recurrent changes in at least 50% of the samples, we observe as the most frequent losses of the segments 22q13.1-q13.2 (82%), 1p35.3 (76%), and 14q13.1- q13.2 (67%), involving all histopathological grades. )e analysis of these regions showed the inclusion of genes with functions such as regulation, maintenance of cell survival, reorganization of the cytoskeleton, cell signaling, and DNA repair, among others. However, overall, the profiles observed in meningiomas of this admixed population were very similar to the ones observed in Caucasian groups. An interesting finding was a recurrent gain of 8p22 observed only in grade I meningiomas, a region which includes DLC1, a suppressor candidate gene probably implicated in the developments or progression of meningiomas, usually found deleted, when related to CNAs. |
publishDate |
2020 |
dc.date.accessioned.fl_str_mv |
2020-08-17T13:04:06Z |
dc.date.available.fl_str_mv |
2020-08-17T13:04:06Z |
dc.date.issued.fl_str_mv |
2020 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020. |
dc.identifier.uri.fl_str_mv |
https://patua.iec.gov.br/handle/iec/4145 |
dc.identifier.issn.-.fl_str_mv |
1687-8469 |
dc.identifier.doi.-.fl_str_mv |
10.1155/2020/3821695 |
identifier_str_mv |
SILVEIRA, Michele Amaral da et al. Meningiomas: an overview of the landscape of copy number alterations in samples from an admixed population. Journal of Oncology, v. 2020, ID 3821695, p. 1-7, 2020. 1687-8469 10.1155/2020/3821695 |
url |
https://patua.iec.gov.br/handle/iec/4145 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Hindawi Publishing Corporation |
publisher.none.fl_str_mv |
Hindawi Publishing Corporation |
dc.source.none.fl_str_mv |
reponame:Repositório Digital do Instituto Evandro Chagas (Patuá) instname:Instituto Evandro Chagas (IEC) instacron:IEC |
instname_str |
Instituto Evandro Chagas (IEC) |
instacron_str |
IEC |
institution |
IEC |
reponame_str |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
collection |
Repositório Digital do Instituto Evandro Chagas (Patuá) |
bitstream.url.fl_str_mv |
https://patua.iec.gov.br/bitstreams/77ea4939-ff40-49d1-acc5-7885314c1e28/download https://patua.iec.gov.br/bitstreams/09450ca0-7296-42b6-bac5-5fe939dcb186/download https://patua.iec.gov.br/bitstreams/d47e8eea-1d4e-4003-8ab9-d9934df43fd2/download https://patua.iec.gov.br/bitstreams/51b18029-c9e4-46d1-b8f1-faed165da818/download |
bitstream.checksum.fl_str_mv |
6b1ca0260806f57a165d677986cc5ceb aa5ee68b95d574e35be1f5dad53f0129 ce04369e7f2d96cf6a3159bcbd1c1fce 11832eea31b16df8613079d742d61793 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC) |
repository.mail.fl_str_mv |
clariceneta@iec.gov.br || Biblioteca@iec.gov.br |
_version_ |
1809190040700452864 |