Genome of a husavirus from Southern Brazil
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Revista do Instituto de Medicina Tropical de São Paulo |
Texto Completo: | https://www.revistas.usp.br/rimtsp/article/view/e05 |
Resumo: | New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales. |
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Revista do Instituto de Medicina Tropical de São Paulo |
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Genome of a husavirus from Southern Brazil PicornaviralesHuVStool samplesNew viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales.Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo2023-01-20info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/rimtsp/article/view/e0510.1590/S1678-9946202365005Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05Revista do Instituto de Medicina Tropical de São Paulo; v. 65 (2023); e05Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e051678-99460036-4665reponame:Revista do Instituto de Medicina Tropical de São Pauloinstname:Instituto de Medicina Tropical (IMT)instacron:IMTenghttps://www.revistas.usp.br/rimtsp/article/view/e05/190507Copyright (c) 2023 Meriane Demoliner, Micheli Filippi, Juliana Schons Gularte, Mariana Soares da Silva, Paula Rodrigues de Almeida, Vyctoria Malayhka de Abreu Góes Pereira, Fágner Henrique Heldt, Fernando Rosado Spilkihttps://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccessDemoliner, Meriane Filippi, Micheli Gularte, Juliana Schons Silva, Mariana Soares da Almeida, Paula Rodrigues de Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado 2023-11-14T19:21:38Zoai:revistas.usp.br:article/207091Revistahttp://www.revistas.usp.br/rimtsp/indexPUBhttps://www.revistas.usp.br/rimtsp/oai||revimtsp@usp.br1678-99460036-4665opendoar:2023-11-14T19:21:38Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)false |
dc.title.none.fl_str_mv |
Genome of a husavirus from Southern Brazil |
title |
Genome of a husavirus from Southern Brazil |
spellingShingle |
Genome of a husavirus from Southern Brazil Demoliner, Meriane Picornavirales HuV Stool samples |
title_short |
Genome of a husavirus from Southern Brazil |
title_full |
Genome of a husavirus from Southern Brazil |
title_fullStr |
Genome of a husavirus from Southern Brazil |
title_full_unstemmed |
Genome of a husavirus from Southern Brazil |
title_sort |
Genome of a husavirus from Southern Brazil |
author |
Demoliner, Meriane |
author_facet |
Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons Silva, Mariana Soares da Almeida, Paula Rodrigues de Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado |
author_role |
author |
author2 |
Filippi, Micheli Gularte, Juliana Schons Silva, Mariana Soares da Almeida, Paula Rodrigues de Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Demoliner, Meriane Filippi, Micheli Gularte, Juliana Schons Silva, Mariana Soares da Almeida, Paula Rodrigues de Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado |
dc.subject.por.fl_str_mv |
Picornavirales HuV Stool samples |
topic |
Picornavirales HuV Stool samples |
description |
New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-01-20 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://www.revistas.usp.br/rimtsp/article/view/e05 10.1590/S1678-9946202365005 |
url |
https://www.revistas.usp.br/rimtsp/article/view/e05 |
identifier_str_mv |
10.1590/S1678-9946202365005 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://www.revistas.usp.br/rimtsp/article/view/e05/190507 |
dc.rights.driver.fl_str_mv |
https://creativecommons.org/licenses/by-nc/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo |
publisher.none.fl_str_mv |
Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo |
dc.source.none.fl_str_mv |
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05 Revista do Instituto de Medicina Tropical de São Paulo; v. 65 (2023); e05 Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05 1678-9946 0036-4665 reponame:Revista do Instituto de Medicina Tropical de São Paulo instname:Instituto de Medicina Tropical (IMT) instacron:IMT |
instname_str |
Instituto de Medicina Tropical (IMT) |
instacron_str |
IMT |
institution |
IMT |
reponame_str |
Revista do Instituto de Medicina Tropical de São Paulo |
collection |
Revista do Instituto de Medicina Tropical de São Paulo |
repository.name.fl_str_mv |
Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT) |
repository.mail.fl_str_mv |
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1798951636529315840 |