Genome of a husavirus from Southern Brazil

Detalhes bibliográficos
Autor(a) principal: Demoliner, Meriane
Data de Publicação: 2023
Outros Autores: Filippi, Micheli, Gularte, Juliana Schons, Silva, Mariana Soares da, Almeida, Paula Rodrigues de, Pereira, Vyctoria Malayhka de Abreu Góes, Heldt, Fágner Henrique, Spilki, Fernando Rosado
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista do Instituto de Medicina Tropical de São Paulo
Texto Completo: https://www.revistas.usp.br/rimtsp/article/view/e05
Resumo: New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales.
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spelling Genome of a husavirus from Southern Brazil PicornaviralesHuVStool samplesNew viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales.Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo2023-01-20info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/rimtsp/article/view/e0510.1590/S1678-9946202365005Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05Revista do Instituto de Medicina Tropical de São Paulo; v. 65 (2023); e05Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e051678-99460036-4665reponame:Revista do Instituto de Medicina Tropical de São Pauloinstname:Instituto de Medicina Tropical (IMT)instacron:IMTenghttps://www.revistas.usp.br/rimtsp/article/view/e05/190507Copyright (c) 2023 Meriane Demoliner, Micheli Filippi, Juliana Schons Gularte, Mariana Soares da Silva, Paula Rodrigues de Almeida, Vyctoria Malayhka de Abreu Góes Pereira, Fágner Henrique Heldt, Fernando Rosado Spilkihttps://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccessDemoliner, Meriane Filippi, Micheli Gularte, Juliana Schons Silva, Mariana Soares da Almeida, Paula Rodrigues de Pereira, Vyctoria Malayhka de Abreu Góes Heldt, Fágner Henrique Spilki, Fernando Rosado 2023-11-14T19:21:38Zoai:revistas.usp.br:article/207091Revistahttp://www.revistas.usp.br/rimtsp/indexPUBhttps://www.revistas.usp.br/rimtsp/oai||revimtsp@usp.br1678-99460036-4665opendoar:2023-11-14T19:21:38Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)false
dc.title.none.fl_str_mv Genome of a husavirus from Southern Brazil
title Genome of a husavirus from Southern Brazil
spellingShingle Genome of a husavirus from Southern Brazil
Demoliner, Meriane
Picornavirales
HuV
Stool samples
title_short Genome of a husavirus from Southern Brazil
title_full Genome of a husavirus from Southern Brazil
title_fullStr Genome of a husavirus from Southern Brazil
title_full_unstemmed Genome of a husavirus from Southern Brazil
title_sort Genome of a husavirus from Southern Brazil
author Demoliner, Meriane
author_facet Demoliner, Meriane
Filippi, Micheli
Gularte, Juliana Schons
Silva, Mariana Soares da
Almeida, Paula Rodrigues de
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
author_role author
author2 Filippi, Micheli
Gularte, Juliana Schons
Silva, Mariana Soares da
Almeida, Paula Rodrigues de
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Demoliner, Meriane
Filippi, Micheli
Gularte, Juliana Schons
Silva, Mariana Soares da
Almeida, Paula Rodrigues de
Pereira, Vyctoria Malayhka de Abreu Góes
Heldt, Fágner Henrique
Spilki, Fernando Rosado
dc.subject.por.fl_str_mv Picornavirales
HuV
Stool samples
topic Picornavirales
HuV
Stool samples
description New viruses of the Picornavirales order have been discovered with the increase in the number of sequences obtained by high-throughput sequencing, as well as human stoolassociated RNA virus (husavirus [HuV]), found in human stool samples. However, there is much to be clarified about HuV. Its cellular host, evolutionary history, and other biological characteristics are still unknown. Therefore, samples collected from human beings and environmental samples in a watershed in Southern Brazil were processed for the metagenomic library. Upon metagenomic analysis, we identified a HuV (husavirus LMM_67754 OP019707) genome with 8,846 bp, which was reported for the first time in Southern Brazil. The new genome presents only 37% of nucleotide identity with Brazilian strains and more than 90% with genomes from China, Vietnam, Venezuela, and the Netherlands. The HuV phylogeny presents significant differences among genomes, probably because multiple introductions of the virus may have occurred. Many questions still need to be answered about HuV. Therefore, more sequences and studies on this virus are necessary to improve the comprehension of the unknown origin of Picornavirales.
publishDate 2023
dc.date.none.fl_str_mv 2023-01-20
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/e05
10.1590/S1678-9946202365005
url https://www.revistas.usp.br/rimtsp/article/view/e05
identifier_str_mv 10.1590/S1678-9946202365005
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/e05/190507
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by-nc/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
dc.source.none.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05
Revista do Instituto de Medicina Tropical de São Paulo; v. 65 (2023); e05
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 65 (2023); e05
1678-9946
0036-4665
reponame:Revista do Instituto de Medicina Tropical de São Paulo
instname:Instituto de Medicina Tropical (IMT)
instacron:IMT
instname_str Instituto de Medicina Tropical (IMT)
instacron_str IMT
institution IMT
reponame_str Revista do Instituto de Medicina Tropical de São Paulo
collection Revista do Instituto de Medicina Tropical de São Paulo
repository.name.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)
repository.mail.fl_str_mv ||revimtsp@usp.br
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