Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism

Detalhes bibliográficos
Autor(a) principal: Souza, M T
Data de Publicação: 2014
Outros Autores: Carvalho-zilse, Gislene Almeida
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/14989
Resumo: In countries containing a mega diversity of wildlife, such as Brazil, identifying and characterizing biological diversity is a continuous process for the scientific community, even in face of technological and scientific advances. This activity demands initiatives for the taxonomic identification of highly diverse groups, such as stingless bees, including molecular analysis strategies. This type of bee is distributed in all of the Brazilian states, with the highest species diversity being found in the State of Amazônia. However, the estimated number of species diverges among taxonomists. These bees are considered the main pollinators in the Amazon rainforest, in which they obtain food and shelter; however, their persistence is constantly threatened by deforestation pressure. Hence, it is important to classify the number and abundance of bee specie, to measure their decline and implement meaningful, priority conservation strategies. This study aims to maximize the implementation of more direct, economic and successful techniques for the taxonomic identification of stingless bees. Specifically, the genes 16S rRNA and COI from mitochondrial DNA were used as molecular markers to differentiate 9 species of Amazonian stingless bees based on DNA polymorphism, using the polymerase chain reaction-single-strand conformation polymorphism technique. We registered different, exclusive SSCP haplotypes for both genes in all species analyzed. These results demonstrate that SSCP is a simple and cost-effective technique that is applicable to the molecular identification of stingless bee species. © FUNPEC-RP.
id INPA-2_166ebdef0df793f93f2b39ae1c1303d2
oai_identifier_str oai:repositorio:1/14989
network_acronym_str INPA-2
network_name_str Repositório Institucional do INPA
repository_id_str
spelling Souza, M TCarvalho-zilse, Gislene Almeida2020-05-07T14:00:21Z2020-05-07T14:00:21Z2014https://repositorio.inpa.gov.br/handle/1/1498910.4238/2014.July.25.4In countries containing a mega diversity of wildlife, such as Brazil, identifying and characterizing biological diversity is a continuous process for the scientific community, even in face of technological and scientific advances. This activity demands initiatives for the taxonomic identification of highly diverse groups, such as stingless bees, including molecular analysis strategies. This type of bee is distributed in all of the Brazilian states, with the highest species diversity being found in the State of Amazônia. However, the estimated number of species diverges among taxonomists. These bees are considered the main pollinators in the Amazon rainforest, in which they obtain food and shelter; however, their persistence is constantly threatened by deforestation pressure. Hence, it is important to classify the number and abundance of bee specie, to measure their decline and implement meaningful, priority conservation strategies. This study aims to maximize the implementation of more direct, economic and successful techniques for the taxonomic identification of stingless bees. Specifically, the genes 16S rRNA and COI from mitochondrial DNA were used as molecular markers to differentiate 9 species of Amazonian stingless bees based on DNA polymorphism, using the polymerase chain reaction-single-strand conformation polymorphism technique. We registered different, exclusive SSCP haplotypes for both genes in all species analyzed. These results demonstrate that SSCP is a simple and cost-effective technique that is applicable to the molecular identification of stingless bee species. © FUNPEC-RP.Volume 13, Número 3, Pags. 5507-5513Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessDna, MitochondrialMolecular MarkerCytochrome C OxidaseDna, MitochondrialRna 16sAdultBrasilCoi GeneCost Effectiveness AnalysisDna PolymorphismGeneGenetic DistanceGenetic IdentificationHaplotypeMelipona DubiaMelipona EburneaMelipona InterruptaMelipona NebulosaMelipona RufiventrisMelipona SeminigraNonhumanPolymerase Chain ReactionRna 16s GeneScaptotrigona PolystictaSingle Strand Conformation PolymorphismSpecies DifferentiationSpecies IdentificationStingless BeeTaxonomic IdentificationTrigona WillianaAnimalsBeeClassificationPolymorphism, GeneticGeneticsGeographyEvolution, MolecularPolymerase Chain ReactionGenetics, PopulationSingle Strand Conformation PolymorphismAnimalBeesBrasilDna, MitochondrialElectron Transport Complex IvEvolution, MolecularGenetics, PopulationGeographyHaplotypesPolymerase Chain ReactionPolymorphism, GeneticPolymorphism, Single-stranded ConformationalRna, Ribosomal, 16sMolecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphisminfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Researchengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf548705https://repositorio.inpa.gov.br/bitstream/1/14989/1/artigo-inpa.pdf40152d95219ab17c7f07bc9ce037d997MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14989/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/149892020-07-14 10:30:33.646oai:repositorio:1/14989Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:30:33Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
title Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
spellingShingle Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
Souza, M T
Dna, Mitochondrial
Molecular Marker
Cytochrome C Oxidase
Dna, Mitochondrial
Rna 16s
Adult
Brasil
Coi Gene
Cost Effectiveness Analysis
Dna Polymorphism
Gene
Genetic Distance
Genetic Identification
Haplotype
Melipona Dubia
Melipona Eburnea
Melipona Interrupta
Melipona Nebulosa
Melipona Rufiventris
Melipona Seminigra
Nonhuman
Polymerase Chain Reaction
Rna 16s Gene
Scaptotrigona Polysticta
Single Strand Conformation Polymorphism
Species Differentiation
Species Identification
Stingless Bee
Taxonomic Identification
Trigona Williana
Animals
Bee
Classification
Polymorphism, Genetic
Genetics
Geography
Evolution, Molecular
Polymerase Chain Reaction
Genetics, Population
Single Strand Conformation Polymorphism
Animal
Bees
Brasil
Dna, Mitochondrial
Electron Transport Complex Iv
Evolution, Molecular
Genetics, Population
Geography
Haplotypes
Polymerase Chain Reaction
Polymorphism, Genetic
Polymorphism, Single-stranded Conformational
Rna, Ribosomal, 16s
title_short Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
title_full Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
title_fullStr Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
title_full_unstemmed Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
title_sort Molecular identification of Amazonian stingless bees using polymerase chain reaction single-strand conformation polymorphism
author Souza, M T
author_facet Souza, M T
Carvalho-zilse, Gislene Almeida
author_role author
author2 Carvalho-zilse, Gislene Almeida
author2_role author
dc.contributor.author.fl_str_mv Souza, M T
Carvalho-zilse, Gislene Almeida
dc.subject.eng.fl_str_mv Dna, Mitochondrial
Molecular Marker
Cytochrome C Oxidase
Dna, Mitochondrial
Rna 16s
Adult
Brasil
Coi Gene
Cost Effectiveness Analysis
Dna Polymorphism
Gene
Genetic Distance
Genetic Identification
Haplotype
Melipona Dubia
Melipona Eburnea
Melipona Interrupta
Melipona Nebulosa
Melipona Rufiventris
Melipona Seminigra
Nonhuman
Polymerase Chain Reaction
Rna 16s Gene
Scaptotrigona Polysticta
Single Strand Conformation Polymorphism
Species Differentiation
Species Identification
Stingless Bee
Taxonomic Identification
Trigona Williana
Animals
Bee
Classification
Polymorphism, Genetic
Genetics
Geography
Evolution, Molecular
Polymerase Chain Reaction
Genetics, Population
Single Strand Conformation Polymorphism
Animal
Bees
Brasil
Dna, Mitochondrial
Electron Transport Complex Iv
Evolution, Molecular
Genetics, Population
Geography
Haplotypes
Polymerase Chain Reaction
Polymorphism, Genetic
Polymorphism, Single-stranded Conformational
Rna, Ribosomal, 16s
topic Dna, Mitochondrial
Molecular Marker
Cytochrome C Oxidase
Dna, Mitochondrial
Rna 16s
Adult
Brasil
Coi Gene
Cost Effectiveness Analysis
Dna Polymorphism
Gene
Genetic Distance
Genetic Identification
Haplotype
Melipona Dubia
Melipona Eburnea
Melipona Interrupta
Melipona Nebulosa
Melipona Rufiventris
Melipona Seminigra
Nonhuman
Polymerase Chain Reaction
Rna 16s Gene
Scaptotrigona Polysticta
Single Strand Conformation Polymorphism
Species Differentiation
Species Identification
Stingless Bee
Taxonomic Identification
Trigona Williana
Animals
Bee
Classification
Polymorphism, Genetic
Genetics
Geography
Evolution, Molecular
Polymerase Chain Reaction
Genetics, Population
Single Strand Conformation Polymorphism
Animal
Bees
Brasil
Dna, Mitochondrial
Electron Transport Complex Iv
Evolution, Molecular
Genetics, Population
Geography
Haplotypes
Polymerase Chain Reaction
Polymorphism, Genetic
Polymorphism, Single-stranded Conformational
Rna, Ribosomal, 16s
description In countries containing a mega diversity of wildlife, such as Brazil, identifying and characterizing biological diversity is a continuous process for the scientific community, even in face of technological and scientific advances. This activity demands initiatives for the taxonomic identification of highly diverse groups, such as stingless bees, including molecular analysis strategies. This type of bee is distributed in all of the Brazilian states, with the highest species diversity being found in the State of Amazônia. However, the estimated number of species diverges among taxonomists. These bees are considered the main pollinators in the Amazon rainforest, in which they obtain food and shelter; however, their persistence is constantly threatened by deforestation pressure. Hence, it is important to classify the number and abundance of bee specie, to measure their decline and implement meaningful, priority conservation strategies. This study aims to maximize the implementation of more direct, economic and successful techniques for the taxonomic identification of stingless bees. Specifically, the genes 16S rRNA and COI from mitochondrial DNA were used as molecular markers to differentiate 9 species of Amazonian stingless bees based on DNA polymorphism, using the polymerase chain reaction-single-strand conformation polymorphism technique. We registered different, exclusive SSCP haplotypes for both genes in all species analyzed. These results demonstrate that SSCP is a simple and cost-effective technique that is applicable to the molecular identification of stingless bee species. © FUNPEC-RP.
publishDate 2014
dc.date.issued.fl_str_mv 2014
dc.date.accessioned.fl_str_mv 2020-05-07T14:00:21Z
dc.date.available.fl_str_mv 2020-05-07T14:00:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/14989
dc.identifier.doi.none.fl_str_mv 10.4238/2014.July.25.4
url https://repositorio.inpa.gov.br/handle/1/14989
identifier_str_mv 10.4238/2014.July.25.4
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 13, Número 3, Pags. 5507-5513
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Genetics and Molecular Research
publisher.none.fl_str_mv Genetics and Molecular Research
dc.source.none.fl_str_mv reponame:Repositório Institucional do INPA
instname:Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron:INPA
instname_str Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron_str INPA
institution INPA
reponame_str Repositório Institucional do INPA
collection Repositório Institucional do INPA
bitstream.url.fl_str_mv https://repositorio.inpa.gov.br/bitstream/1/14989/1/artigo-inpa.pdf
https://repositorio.inpa.gov.br/bitstream/1/14989/2/license_rdf
bitstream.checksum.fl_str_mv 40152d95219ab17c7f07bc9ce037d997
4d2950bda3d176f570a9f8b328dfbbef
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)
repository.mail.fl_str_mv
_version_ 1809928883118538752