Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional do INPA |
Texto Completo: | https://repositorio.inpa.gov.br/handle/1/14999 |
Resumo: | The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP. |
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Silva, Themis JesusMonjeló, Luiz Alberto dos SantosViana, Maria N.S.Pezzuti, Juarez Carlos BritoAndrade, Paulo César MachadoVogt, Richard CarlFarias, Izeni P.2020-05-07T14:00:26Z2020-05-07T14:00:26Z2011https://repositorio.inpa.gov.br/handle/1/1499910.4238/vol10-3gmr1163The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP.Volume 10, Número 3, Pags. 1393-1402Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAnimals ExperimentBrasilFreshwater SpeciesGene SequenceGenetic VariabilityHaplotypeMitochondrial GeneNd1 GeneNonhumanNucleic Acid Base SubstitutionPodocnemis SextuberculataPopulation Genetic StructurePopulation MigrationRiver BasinSamplingTurtleAnimalBrasilColombiaDna, MitochondrialGenetics, PopulationHaplotypesPeruTurtlesAnimalsiaPodocnemis SextuberculataTestudinesPopulation genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basininfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Researchengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf695807https://repositorio.inpa.gov.br/bitstream/1/14999/1/artigo-inpa.pdf3fe0e38e6a9063ed48b6072e507a7840MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14999/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/149992020-07-14 10:30:43.113oai:repositorio:1/14999Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:30:43Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false |
dc.title.en.fl_str_mv |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
title |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
spellingShingle |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin Silva, Themis Jesus Animals Experiment Brasil Freshwater Species Gene Sequence Genetic Variability Haplotype Mitochondrial Gene Nd1 Gene Nonhuman Nucleic Acid Base Substitution Podocnemis Sextuberculata Population Genetic Structure Population Migration River Basin Sampling Turtle Animal Brasil Colombia Dna, Mitochondrial Genetics, Population Haplotypes Peru Turtles Animalsia Podocnemis Sextuberculata Testudines |
title_short |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
title_full |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
title_fullStr |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
title_full_unstemmed |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
title_sort |
Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin |
author |
Silva, Themis Jesus |
author_facet |
Silva, Themis Jesus Monjeló, Luiz Alberto dos Santos Viana, Maria N.S. Pezzuti, Juarez Carlos Brito Andrade, Paulo César Machado Vogt, Richard Carl Farias, Izeni P. |
author_role |
author |
author2 |
Monjeló, Luiz Alberto dos Santos Viana, Maria N.S. Pezzuti, Juarez Carlos Brito Andrade, Paulo César Machado Vogt, Richard Carl Farias, Izeni P. |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Silva, Themis Jesus Monjeló, Luiz Alberto dos Santos Viana, Maria N.S. Pezzuti, Juarez Carlos Brito Andrade, Paulo César Machado Vogt, Richard Carl Farias, Izeni P. |
dc.subject.eng.fl_str_mv |
Animals Experiment Brasil Freshwater Species Gene Sequence Genetic Variability Haplotype Mitochondrial Gene Nd1 Gene Nonhuman Nucleic Acid Base Substitution Podocnemis Sextuberculata Population Genetic Structure Population Migration River Basin Sampling Turtle Animal Brasil Colombia Dna, Mitochondrial Genetics, Population Haplotypes Peru Turtles Animalsia Podocnemis Sextuberculata Testudines |
topic |
Animals Experiment Brasil Freshwater Species Gene Sequence Genetic Variability Haplotype Mitochondrial Gene Nd1 Gene Nonhuman Nucleic Acid Base Substitution Podocnemis Sextuberculata Population Genetic Structure Population Migration River Basin Sampling Turtle Animal Brasil Colombia Dna, Mitochondrial Genetics, Population Haplotypes Peru Turtles Animalsia Podocnemis Sextuberculata Testudines |
description |
The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP. |
publishDate |
2011 |
dc.date.issued.fl_str_mv |
2011 |
dc.date.accessioned.fl_str_mv |
2020-05-07T14:00:26Z |
dc.date.available.fl_str_mv |
2020-05-07T14:00:26Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://repositorio.inpa.gov.br/handle/1/14999 |
dc.identifier.doi.none.fl_str_mv |
10.4238/vol10-3gmr1163 |
url |
https://repositorio.inpa.gov.br/handle/1/14999 |
identifier_str_mv |
10.4238/vol10-3gmr1163 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Volume 10, Número 3, Pags. 1393-1402 |
dc.rights.driver.fl_str_mv |
Attribution-NonCommercial-NoDerivs 3.0 Brazil http://creativecommons.org/licenses/by-nc-nd/3.0/br/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution-NonCommercial-NoDerivs 3.0 Brazil http://creativecommons.org/licenses/by-nc-nd/3.0/br/ |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Genetics and Molecular Research |
publisher.none.fl_str_mv |
Genetics and Molecular Research |
dc.source.none.fl_str_mv |
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