Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin

Detalhes bibliográficos
Autor(a) principal: Silva, Themis Jesus
Data de Publicação: 2011
Outros Autores: Monjeló, Luiz Alberto dos Santos, Viana, Maria N.S., Pezzuti, Juarez Carlos Brito, Andrade, Paulo César Machado, Vogt, Richard Carl, Farias, Izeni P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/14999
Resumo: The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP.
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spelling Silva, Themis JesusMonjeló, Luiz Alberto dos SantosViana, Maria N.S.Pezzuti, Juarez Carlos BritoAndrade, Paulo César MachadoVogt, Richard CarlFarias, Izeni P.2020-05-07T14:00:26Z2020-05-07T14:00:26Z2011https://repositorio.inpa.gov.br/handle/1/1499910.4238/vol10-3gmr1163The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP.Volume 10, Número 3, Pags. 1393-1402Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAnimals ExperimentBrasilFreshwater SpeciesGene SequenceGenetic VariabilityHaplotypeMitochondrial GeneNd1 GeneNonhumanNucleic Acid Base SubstitutionPodocnemis SextuberculataPopulation Genetic StructurePopulation MigrationRiver BasinSamplingTurtleAnimalBrasilColombiaDna, MitochondrialGenetics, PopulationHaplotypesPeruTurtlesAnimalsiaPodocnemis SextuberculataTestudinesPopulation genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basininfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Researchengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf695807https://repositorio.inpa.gov.br/bitstream/1/14999/1/artigo-inpa.pdf3fe0e38e6a9063ed48b6072e507a7840MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14999/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/149992020-07-14 10:30:43.113oai:repositorio:1/14999Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:30:43Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
title Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
spellingShingle Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
Silva, Themis Jesus
Animals Experiment
Brasil
Freshwater Species
Gene Sequence
Genetic Variability
Haplotype
Mitochondrial Gene
Nd1 Gene
Nonhuman
Nucleic Acid Base Substitution
Podocnemis Sextuberculata
Population Genetic Structure
Population Migration
River Basin
Sampling
Turtle
Animal
Brasil
Colombia
Dna, Mitochondrial
Genetics, Population
Haplotypes
Peru
Turtles
Animalsia
Podocnemis Sextuberculata
Testudines
title_short Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
title_full Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
title_fullStr Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
title_full_unstemmed Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
title_sort Population genetics analysis of Podocnemis sextuberculata (Testudines, Podocnemidae): Lack of population structure in the central Amazon Basin
author Silva, Themis Jesus
author_facet Silva, Themis Jesus
Monjeló, Luiz Alberto dos Santos
Viana, Maria N.S.
Pezzuti, Juarez Carlos Brito
Andrade, Paulo César Machado
Vogt, Richard Carl
Farias, Izeni P.
author_role author
author2 Monjeló, Luiz Alberto dos Santos
Viana, Maria N.S.
Pezzuti, Juarez Carlos Brito
Andrade, Paulo César Machado
Vogt, Richard Carl
Farias, Izeni P.
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Silva, Themis Jesus
Monjeló, Luiz Alberto dos Santos
Viana, Maria N.S.
Pezzuti, Juarez Carlos Brito
Andrade, Paulo César Machado
Vogt, Richard Carl
Farias, Izeni P.
dc.subject.eng.fl_str_mv Animals Experiment
Brasil
Freshwater Species
Gene Sequence
Genetic Variability
Haplotype
Mitochondrial Gene
Nd1 Gene
Nonhuman
Nucleic Acid Base Substitution
Podocnemis Sextuberculata
Population Genetic Structure
Population Migration
River Basin
Sampling
Turtle
Animal
Brasil
Colombia
Dna, Mitochondrial
Genetics, Population
Haplotypes
Peru
Turtles
Animalsia
Podocnemis Sextuberculata
Testudines
topic Animals Experiment
Brasil
Freshwater Species
Gene Sequence
Genetic Variability
Haplotype
Mitochondrial Gene
Nd1 Gene
Nonhuman
Nucleic Acid Base Substitution
Podocnemis Sextuberculata
Population Genetic Structure
Population Migration
River Basin
Sampling
Turtle
Animal
Brasil
Colombia
Dna, Mitochondrial
Genetics, Population
Haplotypes
Peru
Turtles
Animalsia
Podocnemis Sextuberculata
Testudines
description The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from Reserva Federal de Abufari, Tapauá, Amazonas State; Reserva de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas State, and Terra Santa, Pará State. All of these are over 1000 km from each other. A partial 415-bp sequence of the mitochondrial gene ND1 was utilized as a molecular marker. Seven haplotypes were observed; the most common haplotype was shared by all the areas sampled, while the rarest haplotypes were represented by a single individual and were thus restricted to a single locality. The sharing of the most common haplotype, the high number of migrants (Nm) and the AMOVA results indicate a lack of genetic structure among the sampling localities. The levels of genetic variability observed were homogeneous among the sampling localities. These results (O{middle tilde} ST and Nm) are compatible with what is known about the ecology of this species, which has a great migratory capacity. © FUNPEC-RP.
publishDate 2011
dc.date.issued.fl_str_mv 2011
dc.date.accessioned.fl_str_mv 2020-05-07T14:00:26Z
dc.date.available.fl_str_mv 2020-05-07T14:00:26Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/14999
dc.identifier.doi.none.fl_str_mv 10.4238/vol10-3gmr1163
url https://repositorio.inpa.gov.br/handle/1/14999
identifier_str_mv 10.4238/vol10-3gmr1163
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 10, Número 3, Pags. 1393-1402
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Genetics and Molecular Research
publisher.none.fl_str_mv Genetics and Molecular Research
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