Effects of sample size on estimates of population growth rates calculated with matrix models

Detalhes bibliográficos
Autor(a) principal: Fiske, Ian J.
Data de Publicação: 2008
Outros Autores: Bruna, Emilio M., Bolker, Benjamin M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/14735
Resumo: Background: Matrix models are widely used to study the dynamics and demography of populations. An important but overlooked issue is how the number of individuals sampled influences estimates of the population growth rate (λ) calculated with matrix models. Even unbiased estimates of vital rates do not ensure unbiased estimates of λ-Jensen's Inequality implies that even when the estimates of the vital rates are accurate, small sample sizes lead to biased estimates of λ due to increased sampling variance. We investigated if sampling variability and the distribution of sampling effort among size classes lead to biases in estimates of λ. Methodology/Principal Findings: Using data from a long-term field study of plant demography, we simulated the effects of sampling variance by drawing vital rates and calculating λ for increasingly larger populations drawn from a total population of 3842 plants. We then compared these estimates of λ with those based on the entire population and calculated the resulting bias. Finally, we conducted a review of the literature to determine the sample sizes typically used when parameterizing matrix models used to study plant demography. Conclusions/Significance: We found significant bias at small sample sizes when survival was low (survival=0.5), and that sampling with a more-realistic inverse J-shaped population structure exacerbated this bias. However our simulations also demonstrate that these biases rapidly become negligible with increasing sample sizes or as survival increases. For many of the sample sizes used in demographic studies, matrix models are probably robust to the biases resulting from sampling variance of vital rates. However, this conclusion may depend on the structure of populations or the distribution of sampling effort in ways that are unexplored. We suggest more intensive sampling of populations when individual survival is low and greater sampling of stages with high elasticities. © 2008 Fiske et al.
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spelling Fiske, Ian J.Bruna, Emilio M.Bolker, Benjamin M.2020-04-24T17:01:08Z2020-04-24T17:01:08Z2008https://repositorio.inpa.gov.br/handle/1/1473510.1371/journal.pone.0003080Background: Matrix models are widely used to study the dynamics and demography of populations. An important but overlooked issue is how the number of individuals sampled influences estimates of the population growth rate (λ) calculated with matrix models. Even unbiased estimates of vital rates do not ensure unbiased estimates of λ-Jensen's Inequality implies that even when the estimates of the vital rates are accurate, small sample sizes lead to biased estimates of λ due to increased sampling variance. We investigated if sampling variability and the distribution of sampling effort among size classes lead to biases in estimates of λ. Methodology/Principal Findings: Using data from a long-term field study of plant demography, we simulated the effects of sampling variance by drawing vital rates and calculating λ for increasingly larger populations drawn from a total population of 3842 plants. We then compared these estimates of λ with those based on the entire population and calculated the resulting bias. Finally, we conducted a review of the literature to determine the sample sizes typically used when parameterizing matrix models used to study plant demography. Conclusions/Significance: We found significant bias at small sample sizes when survival was low (survival=0.5), and that sampling with a more-realistic inverse J-shaped population structure exacerbated this bias. However our simulations also demonstrate that these biases rapidly become negligible with increasing sample sizes or as survival increases. For many of the sample sizes used in demographic studies, matrix models are probably robust to the biases resulting from sampling variance of vital rates. However, this conclusion may depend on the structure of populations or the distribution of sampling effort in ways that are unexplored. We suggest more intensive sampling of populations when individual survival is low and greater sampling of stages with high elasticities. © 2008 Fiske et al.Volume 3, Número 8Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAccuracyControlled StudyDemographyGrowth RateMathematical ComputingMathematical ModelMatrix ModelNonhumanPlant DensityPopulation GrowthPopulation ResearchPopulation SizePopulation StructureSample SizeSpecies DistributionStatistical AnalysisSurvival RateBiological ModelClassificationCytologyEpidemiologyFertilityObserver VariationPlantPlant PhysiologyPopulation DensityPopulation DynamicsPopulation GrowthSample SizeStatistical ModelDemographyFertilityModels, BiologicalModels, StatisticalObserver VariationPlant Physiological PhenomenaPlantsPopulation DensityPopulation DynamicsPopulation GrowthSample SizeSampling StudiesEffects of sample size on estimates of population growth rates calculated with matrix modelsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePLoS ONEengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf200238https://repositorio.inpa.gov.br/bitstream/1/14735/1/artigo-inpa.pdf7aca7b42800ec0efaef4c8b188547a53MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14735/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/147352020-07-14 10:18:03.194oai:repositorio:1/14735Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:18:03Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Effects of sample size on estimates of population growth rates calculated with matrix models
title Effects of sample size on estimates of population growth rates calculated with matrix models
spellingShingle Effects of sample size on estimates of population growth rates calculated with matrix models
Fiske, Ian J.
Accuracy
Controlled Study
Demography
Growth Rate
Mathematical Computing
Mathematical Model
Matrix Model
Nonhuman
Plant Density
Population Growth
Population Research
Population Size
Population Structure
Sample Size
Species Distribution
Statistical Analysis
Survival Rate
Biological Model
Classification
Cytology
Epidemiology
Fertility
Observer Variation
Plant
Plant Physiology
Population Density
Population Dynamics
Population Growth
Sample Size
Statistical Model
Demography
Fertility
Models, Biological
Models, Statistical
Observer Variation
Plant Physiological Phenomena
Plants
Population Density
Population Dynamics
Population Growth
Sample Size
Sampling Studies
title_short Effects of sample size on estimates of population growth rates calculated with matrix models
title_full Effects of sample size on estimates of population growth rates calculated with matrix models
title_fullStr Effects of sample size on estimates of population growth rates calculated with matrix models
title_full_unstemmed Effects of sample size on estimates of population growth rates calculated with matrix models
title_sort Effects of sample size on estimates of population growth rates calculated with matrix models
author Fiske, Ian J.
author_facet Fiske, Ian J.
Bruna, Emilio M.
Bolker, Benjamin M.
author_role author
author2 Bruna, Emilio M.
Bolker, Benjamin M.
author2_role author
author
dc.contributor.author.fl_str_mv Fiske, Ian J.
Bruna, Emilio M.
Bolker, Benjamin M.
dc.subject.eng.fl_str_mv Accuracy
Controlled Study
Demography
Growth Rate
Mathematical Computing
Mathematical Model
Matrix Model
Nonhuman
Plant Density
Population Growth
Population Research
Population Size
Population Structure
Sample Size
Species Distribution
Statistical Analysis
Survival Rate
Biological Model
Classification
Cytology
Epidemiology
Fertility
Observer Variation
Plant
Plant Physiology
Population Density
Population Dynamics
Population Growth
Sample Size
Statistical Model
Demography
Fertility
Models, Biological
Models, Statistical
Observer Variation
Plant Physiological Phenomena
Plants
Population Density
Population Dynamics
Population Growth
Sample Size
Sampling Studies
topic Accuracy
Controlled Study
Demography
Growth Rate
Mathematical Computing
Mathematical Model
Matrix Model
Nonhuman
Plant Density
Population Growth
Population Research
Population Size
Population Structure
Sample Size
Species Distribution
Statistical Analysis
Survival Rate
Biological Model
Classification
Cytology
Epidemiology
Fertility
Observer Variation
Plant
Plant Physiology
Population Density
Population Dynamics
Population Growth
Sample Size
Statistical Model
Demography
Fertility
Models, Biological
Models, Statistical
Observer Variation
Plant Physiological Phenomena
Plants
Population Density
Population Dynamics
Population Growth
Sample Size
Sampling Studies
description Background: Matrix models are widely used to study the dynamics and demography of populations. An important but overlooked issue is how the number of individuals sampled influences estimates of the population growth rate (λ) calculated with matrix models. Even unbiased estimates of vital rates do not ensure unbiased estimates of λ-Jensen's Inequality implies that even when the estimates of the vital rates are accurate, small sample sizes lead to biased estimates of λ due to increased sampling variance. We investigated if sampling variability and the distribution of sampling effort among size classes lead to biases in estimates of λ. Methodology/Principal Findings: Using data from a long-term field study of plant demography, we simulated the effects of sampling variance by drawing vital rates and calculating λ for increasingly larger populations drawn from a total population of 3842 plants. We then compared these estimates of λ with those based on the entire population and calculated the resulting bias. Finally, we conducted a review of the literature to determine the sample sizes typically used when parameterizing matrix models used to study plant demography. Conclusions/Significance: We found significant bias at small sample sizes when survival was low (survival=0.5), and that sampling with a more-realistic inverse J-shaped population structure exacerbated this bias. However our simulations also demonstrate that these biases rapidly become negligible with increasing sample sizes or as survival increases. For many of the sample sizes used in demographic studies, matrix models are probably robust to the biases resulting from sampling variance of vital rates. However, this conclusion may depend on the structure of populations or the distribution of sampling effort in ways that are unexplored. We suggest more intensive sampling of populations when individual survival is low and greater sampling of stages with high elasticities. © 2008 Fiske et al.
publishDate 2008
dc.date.issued.fl_str_mv 2008
dc.date.accessioned.fl_str_mv 2020-04-24T17:01:08Z
dc.date.available.fl_str_mv 2020-04-24T17:01:08Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/14735
dc.identifier.doi.none.fl_str_mv 10.1371/journal.pone.0003080
url https://repositorio.inpa.gov.br/handle/1/14735
identifier_str_mv 10.1371/journal.pone.0003080
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 3, Número 8
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv PLoS ONE
publisher.none.fl_str_mv PLoS ONE
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reponame_str Repositório Institucional do INPA
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