One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon

Detalhes bibliográficos
Autor(a) principal: Machado, Valéria Nogueira
Data de Publicação: 2018
Outros Autores: Collins, Rupert A., Ota, Rafaela Priscila, Andrade, Marcelo C., Farias, Izeni P., Hrbek, Tomas
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/15234
Resumo: Piranhas and pacus (Characiformes: Serrasalmidae) are a charismatic but understudied family of Neotropical fishes. Here, we analyse a DNA barcode dataset comprising 1,122 specimens, 69 species, 16 genera, 208 localities, and 34 major river drainages in order to make an inventory of diversity and to highlight taxa and biogeographic areas worthy of further sampling effort and conservation protection. Using four methods of species discovery - incorporating both tree and distance based techniques - we report between 76 and 99 species-like clusters, i.e. between 20% and 33% of a priori identified taxonomic species were represented by more than one mtDNA lineage. There was a high degree of congruence between clusters, with 60% supported by three or four methods. Pacus of the genus Myloplus exhibited the most intraspecific variation, with six of the 13 species sampled found to have multiple lineages. Conversely, piranhas of the Serrasalmus rhombeus group proved difficult to delimit with these methods due to genetic similarity and polyphyly. Overall, our results recognise substantially underestimated diversity in the serrasalmids, and emphasise the Guiana and Brazilian Shield rivers as biogeographically important areas with multiple cases of across-shield and within-shield diversifications. We additionally highlight the distinctiveness and complex phylogeographic history of rheophilic taxa in particular, and suggest multiple colonisations of these habitats by different serrasalmid lineages. © 2018 The Author(s).
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spelling Machado, Valéria NogueiraCollins, Rupert A.Ota, Rafaela PriscilaAndrade, Marcelo C.Farias, Izeni P.Hrbek, Tomas2020-05-07T14:14:55Z2020-05-07T14:14:55Z2018https://repositorio.inpa.gov.br/handle/1/1523410.1038/s41598-018-26550-xPiranhas and pacus (Characiformes: Serrasalmidae) are a charismatic but understudied family of Neotropical fishes. Here, we analyse a DNA barcode dataset comprising 1,122 specimens, 69 species, 16 genera, 208 localities, and 34 major river drainages in order to make an inventory of diversity and to highlight taxa and biogeographic areas worthy of further sampling effort and conservation protection. Using four methods of species discovery - incorporating both tree and distance based techniques - we report between 76 and 99 species-like clusters, i.e. between 20% and 33% of a priori identified taxonomic species were represented by more than one mtDNA lineage. There was a high degree of congruence between clusters, with 60% supported by three or four methods. Pacus of the genus Myloplus exhibited the most intraspecific variation, with six of the 13 species sampled found to have multiple lineages. Conversely, piranhas of the Serrasalmus rhombeus group proved difficult to delimit with these methods due to genetic similarity and polyphyly. Overall, our results recognise substantially underestimated diversity in the serrasalmids, and emphasise the Guiana and Brazilian Shield rivers as biogeographically important areas with multiple cases of across-shield and within-shield diversifications. We additionally highlight the distinctiveness and complex phylogeographic history of rheophilic taxa in particular, and suggest multiple colonisations of these habitats by different serrasalmid lineages. © 2018 The Author(s).Volume 8, Número 1Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAnimalsBiodiversityCharaciformesClassificationDna BarcodingGene LocusGeneticsGeographyPhylogenyAnimalBiodiversityCharaciformesDna Barcoding, TaxonomicGenetic LociGeographyPhylogenyOne thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazoninfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleScientific Reportsengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf5669386https://repositorio.inpa.gov.br/bitstream/1/15234/1/artigo-inpa.pdf7545c193f2b3665680ab14f2d471b2fdMD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/15234/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/152342020-07-14 11:00:22.343oai:repositorio:1/15234Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T15:00:22Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
title One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
spellingShingle One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
Machado, Valéria Nogueira
Animals
Biodiversity
Characiformes
Classification
Dna Barcoding
Gene Locus
Genetics
Geography
Phylogeny
Animal
Biodiversity
Characiformes
Dna Barcoding, Taxonomic
Genetic Loci
Geography
Phylogeny
title_short One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
title_full One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
title_fullStr One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
title_full_unstemmed One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
title_sort One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon
author Machado, Valéria Nogueira
author_facet Machado, Valéria Nogueira
Collins, Rupert A.
Ota, Rafaela Priscila
Andrade, Marcelo C.
Farias, Izeni P.
Hrbek, Tomas
author_role author
author2 Collins, Rupert A.
Ota, Rafaela Priscila
Andrade, Marcelo C.
Farias, Izeni P.
Hrbek, Tomas
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Machado, Valéria Nogueira
Collins, Rupert A.
Ota, Rafaela Priscila
Andrade, Marcelo C.
Farias, Izeni P.
Hrbek, Tomas
dc.subject.eng.fl_str_mv Animals
Biodiversity
Characiformes
Classification
Dna Barcoding
Gene Locus
Genetics
Geography
Phylogeny
Animal
Biodiversity
Characiformes
Dna Barcoding, Taxonomic
Genetic Loci
Geography
Phylogeny
topic Animals
Biodiversity
Characiformes
Classification
Dna Barcoding
Gene Locus
Genetics
Geography
Phylogeny
Animal
Biodiversity
Characiformes
Dna Barcoding, Taxonomic
Genetic Loci
Geography
Phylogeny
description Piranhas and pacus (Characiformes: Serrasalmidae) are a charismatic but understudied family of Neotropical fishes. Here, we analyse a DNA barcode dataset comprising 1,122 specimens, 69 species, 16 genera, 208 localities, and 34 major river drainages in order to make an inventory of diversity and to highlight taxa and biogeographic areas worthy of further sampling effort and conservation protection. Using four methods of species discovery - incorporating both tree and distance based techniques - we report between 76 and 99 species-like clusters, i.e. between 20% and 33% of a priori identified taxonomic species were represented by more than one mtDNA lineage. There was a high degree of congruence between clusters, with 60% supported by three or four methods. Pacus of the genus Myloplus exhibited the most intraspecific variation, with six of the 13 species sampled found to have multiple lineages. Conversely, piranhas of the Serrasalmus rhombeus group proved difficult to delimit with these methods due to genetic similarity and polyphyly. Overall, our results recognise substantially underestimated diversity in the serrasalmids, and emphasise the Guiana and Brazilian Shield rivers as biogeographically important areas with multiple cases of across-shield and within-shield diversifications. We additionally highlight the distinctiveness and complex phylogeographic history of rheophilic taxa in particular, and suggest multiple colonisations of these habitats by different serrasalmid lineages. © 2018 The Author(s).
publishDate 2018
dc.date.issued.fl_str_mv 2018
dc.date.accessioned.fl_str_mv 2020-05-07T14:14:55Z
dc.date.available.fl_str_mv 2020-05-07T14:14:55Z
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dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/15234
dc.identifier.doi.none.fl_str_mv 10.1038/s41598-018-26550-x
url https://repositorio.inpa.gov.br/handle/1/15234
identifier_str_mv 10.1038/s41598-018-26550-x
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 8, Número 1
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Scientific Reports
publisher.none.fl_str_mv Scientific Reports
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instname:Instituto Nacional de Pesquisas da Amazônia (INPA)
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institution INPA
reponame_str Repositório Institucional do INPA
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