Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers

Detalhes bibliográficos
Autor(a) principal: Dutra, Nicole C.L.
Data de Publicação: 2008
Outros Autores: Telles, Mariana Pires de Campos, Dutra, D. L., Silva, Nelson J.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/15007
Resumo: Bothrops moojeni is an abundant venomous snake responsible for most of the snakebite cases in the Central region of Brazil and as a result of the anthropogenic habitat disturbance, such as the increase in extensive farming, the range of B. moojeni has been greatly fragmented. Here, we obtained genomic DNA from a total of 75 snakes belonging to four populations. Genetic variability evaluated for five RAPD primers was low (He = 0.20) and was not spatially structured. We found evidence of significant genetic divergence among B. moojeni populations that were isolated (ΦST values of 0.21 and 0.25), while populations more proximal exhibited less divergence (ΦST values of 0.04 and 0.08). We found only moderate divergence (ΦST value of 0.12) between two populations greatly isolated (851.83 km apart) along with great differentiation (0.24) between two proximal populations (290 km apart). Even though these populations are close to each other, they occur in an urbanized area that is almost completely covered by extensive crops, representing an obstruction to the mobility of this viper. Molecular variance analysis (AMOVA) showed some degree of subdivision in these populations, with a ΦST value of 0.16, significant to the level of 1% by 1000 random permutations. We also performed a Bayesian analysis that confirmed the AMOVA results and found a value of θB = 0.14 and an f = 0.27, suggesting a high level of endogamy. This is the first study that characterizes genetic variability for this important species of the Bothrops genus, and our data are of significant importance in terms of classifying populations in relation to their conservational value and management strategies. Thus, given the high levels of population structure found in this case, we recommend sampling as many populations as possible to maximize the genetic variability to be preserved when aiming for in situ conservation. The same should be done to perform samplings toward ex situ conservation. ©FUNPEC-RP.
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spelling Dutra, Nicole C.L.Telles, Mariana Pires de CamposDutra, D. L.Silva, Nelson J.2020-05-07T14:00:30Z2020-05-07T14:00:30Z2008https://repositorio.inpa.gov.br/handle/1/1500710.4238/vol7-3gmr413Bothrops moojeni is an abundant venomous snake responsible for most of the snakebite cases in the Central region of Brazil and as a result of the anthropogenic habitat disturbance, such as the increase in extensive farming, the range of B. moojeni has been greatly fragmented. Here, we obtained genomic DNA from a total of 75 snakes belonging to four populations. Genetic variability evaluated for five RAPD primers was low (He = 0.20) and was not spatially structured. We found evidence of significant genetic divergence among B. moojeni populations that were isolated (ΦST values of 0.21 and 0.25), while populations more proximal exhibited less divergence (ΦST values of 0.04 and 0.08). We found only moderate divergence (ΦST value of 0.12) between two populations greatly isolated (851.83 km apart) along with great differentiation (0.24) between two proximal populations (290 km apart). Even though these populations are close to each other, they occur in an urbanized area that is almost completely covered by extensive crops, representing an obstruction to the mobility of this viper. Molecular variance analysis (AMOVA) showed some degree of subdivision in these populations, with a ΦST value of 0.16, significant to the level of 1% by 1000 random permutations. We also performed a Bayesian analysis that confirmed the AMOVA results and found a value of θB = 0.14 and an f = 0.27, suggesting a high level of endogamy. This is the first study that characterizes genetic variability for this important species of the Bothrops genus, and our data are of significant importance in terms of classifying populations in relation to their conservational value and management strategies. Thus, given the high levels of population structure found in this case, we recommend sampling as many populations as possible to maximize the genetic variability to be preserved when aiming for in situ conservation. The same should be done to perform samplings toward ex situ conservation. ©FUNPEC-RP.Volume 7, Número 3, Pags. 603-613Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessGenomic DnaBrasilControlled StudyGenetic ConservationGenetic VariabilityGenome AnalysisNonhumanRandom Amplified Polymorphic DnaSnakeBothropsBothrops MoojeniSerpentesViperinaeGenetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Researchengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf425791https://repositorio.inpa.gov.br/bitstream/1/15007/1/artigo-inpa.pdfa67a8919d260136ef723a11906d9a021MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/15007/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/150072020-07-14 10:30:49.349oai:repositorio:1/15007Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:30:49Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
title Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
spellingShingle Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
Dutra, Nicole C.L.
Genomic Dna
Brasil
Controlled Study
Genetic Conservation
Genetic Variability
Genome Analysis
Nonhuman
Random Amplified Polymorphic Dna
Snake
Bothrops
Bothrops Moojeni
Serpentes
Viperinae
title_short Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
title_full Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
title_fullStr Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
title_full_unstemmed Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
title_sort Genetic diversity in populations of the viper Bothrops moojeni Hoge, 1966 in Central Brazil using RAPD markers
author Dutra, Nicole C.L.
author_facet Dutra, Nicole C.L.
Telles, Mariana Pires de Campos
Dutra, D. L.
Silva, Nelson J.
author_role author
author2 Telles, Mariana Pires de Campos
Dutra, D. L.
Silva, Nelson J.
author2_role author
author
author
dc.contributor.author.fl_str_mv Dutra, Nicole C.L.
Telles, Mariana Pires de Campos
Dutra, D. L.
Silva, Nelson J.
dc.subject.eng.fl_str_mv Genomic Dna
Brasil
Controlled Study
Genetic Conservation
Genetic Variability
Genome Analysis
Nonhuman
Random Amplified Polymorphic Dna
Snake
Bothrops
Bothrops Moojeni
Serpentes
Viperinae
topic Genomic Dna
Brasil
Controlled Study
Genetic Conservation
Genetic Variability
Genome Analysis
Nonhuman
Random Amplified Polymorphic Dna
Snake
Bothrops
Bothrops Moojeni
Serpentes
Viperinae
description Bothrops moojeni is an abundant venomous snake responsible for most of the snakebite cases in the Central region of Brazil and as a result of the anthropogenic habitat disturbance, such as the increase in extensive farming, the range of B. moojeni has been greatly fragmented. Here, we obtained genomic DNA from a total of 75 snakes belonging to four populations. Genetic variability evaluated for five RAPD primers was low (He = 0.20) and was not spatially structured. We found evidence of significant genetic divergence among B. moojeni populations that were isolated (ΦST values of 0.21 and 0.25), while populations more proximal exhibited less divergence (ΦST values of 0.04 and 0.08). We found only moderate divergence (ΦST value of 0.12) between two populations greatly isolated (851.83 km apart) along with great differentiation (0.24) between two proximal populations (290 km apart). Even though these populations are close to each other, they occur in an urbanized area that is almost completely covered by extensive crops, representing an obstruction to the mobility of this viper. Molecular variance analysis (AMOVA) showed some degree of subdivision in these populations, with a ΦST value of 0.16, significant to the level of 1% by 1000 random permutations. We also performed a Bayesian analysis that confirmed the AMOVA results and found a value of θB = 0.14 and an f = 0.27, suggesting a high level of endogamy. This is the first study that characterizes genetic variability for this important species of the Bothrops genus, and our data are of significant importance in terms of classifying populations in relation to their conservational value and management strategies. Thus, given the high levels of population structure found in this case, we recommend sampling as many populations as possible to maximize the genetic variability to be preserved when aiming for in situ conservation. The same should be done to perform samplings toward ex situ conservation. ©FUNPEC-RP.
publishDate 2008
dc.date.issued.fl_str_mv 2008
dc.date.accessioned.fl_str_mv 2020-05-07T14:00:30Z
dc.date.available.fl_str_mv 2020-05-07T14:00:30Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/15007
dc.identifier.doi.none.fl_str_mv 10.4238/vol7-3gmr413
url https://repositorio.inpa.gov.br/handle/1/15007
identifier_str_mv 10.4238/vol7-3gmr413
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 7, Número 3, Pags. 603-613
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Genetics and Molecular Research
publisher.none.fl_str_mv Genetics and Molecular Research
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