Modelagem híbrida multiescala para o crescimento tumoral

Detalhes bibliográficos
Autor(a) principal: Rocha, Heber Lima da
Data de Publicação: 2016
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações do LNCC
Texto Completo: https://tede.lncc.br/handle/tede/236
Resumo: Cancer is a huge world health problem, what is expanding researches on a wide variety of subjects associated with its onset, evolution and treatment. In this work, we perfom a detailed study on the tumor growth mechanisms in order to build a model to describe the evolution of tumors at different scales. We develop a multiscale hybrid model for the avascular tumor growth which integrates phenomena that occur at two scales, the cellular and tissue scales. The cellular scale is described through an agent based model, allowing to deal with each cell individually and to describe the cell behavior in the microenvironment. We represent the nutrient transport in the microenvironment at the tissue scale through a reaction-diffusion partial differential equation. The oxygen is considered the only source of nutrients and its uptake rate plays the role of the bridge between scales. The model encompasses tumor and normal cells, but the latter are kept in homeostasis. Phenotypic states differentiate tumor cells (quiescent, proliferative, apoptotic, hypoxic and necrotic), which may change in accordance with microenvironment conditions. The tumor growth dynamics is ruled by phenotypic transitions, which are mainly deterministic. However, the transitions from quiescent to proliferative and apoptotic states are stochastic. Each cell movement is driven by the force balance among cells, according to Newton's second law. By including normal cells, the tumor growth strongly depends on the mechanical interactions in the microenvironment. To describe these effects, we develop a model to represent the compressive stress accumulation within the growing tumor, which acts by inhibiting further cell proliferation. Computational simulations are conducted to demonstrate that the developed model can adequately describe the complex mechanisms of tumor dynamics, including growth arrest in avascular tumors.
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spelling Almeida, Regina Célia Cerqueira dehttp://lattes.cnpq.br/6688041530466410Lima, Ernesto Augusto Bueno da FonsecaCosta, Michel Iskin da Silveirahttp://lattes.cnpq.br/3313361232260092Mancera, Paulo Fernando de Arruma048885315-01http://lattes.cnpq.br/2811137518552447Rocha, Heber Lima da2016-11-10T17:26:09Z2016-02-29ROCHA, H. L. Modelagem híbrida multiescala para o crescimento tumoral, 2016, xi, 57 f. Dissertação, Programa de Pós-Graduação de Modelagem Computacional, Laboratório Nacional de Computação Científica, Petrópolis, 2016.https://tede.lncc.br/handle/tede/236Cancer is a huge world health problem, what is expanding researches on a wide variety of subjects associated with its onset, evolution and treatment. In this work, we perfom a detailed study on the tumor growth mechanisms in order to build a model to describe the evolution of tumors at different scales. We develop a multiscale hybrid model for the avascular tumor growth which integrates phenomena that occur at two scales, the cellular and tissue scales. The cellular scale is described through an agent based model, allowing to deal with each cell individually and to describe the cell behavior in the microenvironment. We represent the nutrient transport in the microenvironment at the tissue scale through a reaction-diffusion partial differential equation. The oxygen is considered the only source of nutrients and its uptake rate plays the role of the bridge between scales. The model encompasses tumor and normal cells, but the latter are kept in homeostasis. Phenotypic states differentiate tumor cells (quiescent, proliferative, apoptotic, hypoxic and necrotic), which may change in accordance with microenvironment conditions. The tumor growth dynamics is ruled by phenotypic transitions, which are mainly deterministic. However, the transitions from quiescent to proliferative and apoptotic states are stochastic. Each cell movement is driven by the force balance among cells, according to Newton's second law. By including normal cells, the tumor growth strongly depends on the mechanical interactions in the microenvironment. To describe these effects, we develop a model to represent the compressive stress accumulation within the growing tumor, which acts by inhibiting further cell proliferation. Computational simulations are conducted to demonstrate that the developed model can adequately describe the complex mechanisms of tumor dynamics, including growth arrest in avascular tumors.O câncer é um enorme problema de saúde global, o que vem impulsionando pesquisas nas mais diversas áreas associadas ao seu surgimento, evolução e terapias. Neste trabalho realizamos um estudo minucioso acerca do crescimento tumoral a fim de construir um modelo que descreve o crescimento tumoral em diversas escalas. Desenvolvemos um modelo multiescala híbrido para o crescimento tumoral avascular que integra fenômenos que ocorrem em duas escalas, uma escala a nível celular e outra a nível de tecido. A escala celular é descrita através de um modelo baseado em agentes, que possibilita tratar cada célula individualmente e descrever seu comportamento no microambiente. Na escala do tecido representamos a dispersão de nutrientes no meio através de uma equação diferencial parcial de reação-difusão. Consideramos o oxigênio como a única fonte de nutrientes e seu consumo é o mecanismo através do qual o acoplamento entre as escalas é realizado. Consideramos que cada célula no modelo pode ser tumoral ou normal, sendo as células normais mantidas em homeostase. As células tumorais são diferenciadas pelos estados fenotípicos (quiescente, proliferativa, apoptótica, hipóxica e necrótica), que podem ser alterados em função das condições do meio. A dinâmica do crescimento tumoral é regida pelas transições entre estados fenotípicos, as quais, em sua maioria, são consideradas eventos determinísticos. Entretanto, as transições do estado quiescente para o proliferativo e para o apoptótico são assumidas como estocásticas. O movimento de cada célula no meio é determinado por um balanço de forças atuantes nas células, de acordo com a segunda lei de Newton. Com a inclusão de células normais, o crescimento do tumor é fortemente influenciado pelas interações mecânicas no microambiente. Para descrever estes efeitos, desenvolvemos um modelo para representar o acúmulo das tensões de compressão no interior do tumor à medida que o tumor cresce, o qual atua inibindo a probabilidade de proliferação das células tumorais. As simulações realizadas demonstram que o modelo desenvolvido consegue representar qualitativamente a dinâmica de tumores em um microambiente genérico e a estagnação do crescimento típica de tumores avasculares.Submitted by Maria Cristina (library@lncc.br) on 2016-11-10T17:25:47Z No. of bitstreams: 1 Dissertação - Heber.pdf: 25456808 bytes, checksum: 5a476a5f9ee83b5ce728802389840142 (MD5)Approved for entry into archive by Maria Cristina (library@lncc.br) on 2016-11-10T17:25:58Z (GMT) No. of bitstreams: 1 Dissertação - Heber.pdf: 25456808 bytes, checksum: 5a476a5f9ee83b5ce728802389840142 (MD5)Made available in DSpace on 2016-11-10T17:26:09Z (GMT). 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dc.title.por.fl_str_mv Modelagem híbrida multiescala para o crescimento tumoral
dc.title.alternative.eng.fl_str_mv A hybrid multiscale framework for tumor growth modeling
title Modelagem híbrida multiescala para o crescimento tumoral
spellingShingle Modelagem híbrida multiescala para o crescimento tumoral
Rocha, Heber Lima da
Modelos matemáticos
Cancer
Mathematical models
CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
CNPQ::CIENCIAS EXATAS E DA TERRA::MATEMATICA::MATEMATICA APLICADA
title_short Modelagem híbrida multiescala para o crescimento tumoral
title_full Modelagem híbrida multiescala para o crescimento tumoral
title_fullStr Modelagem híbrida multiescala para o crescimento tumoral
title_full_unstemmed Modelagem híbrida multiescala para o crescimento tumoral
title_sort Modelagem híbrida multiescala para o crescimento tumoral
author Rocha, Heber Lima da
author_facet Rocha, Heber Lima da
author_role author
dc.contributor.advisor1.fl_str_mv Almeida, Regina Célia Cerqueira de
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/6688041530466410
dc.contributor.advisor2.fl_str_mv Lima, Ernesto Augusto Bueno da Fonseca
dc.contributor.referee1.fl_str_mv Costa, Michel Iskin da Silveira
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/3313361232260092
dc.contributor.referee2.fl_str_mv Mancera, Paulo Fernando de Arruma
dc.contributor.authorID.fl_str_mv 048885315-01
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2811137518552447
dc.contributor.author.fl_str_mv Rocha, Heber Lima da
contributor_str_mv Almeida, Regina Célia Cerqueira de
Lima, Ernesto Augusto Bueno da Fonseca
Costa, Michel Iskin da Silveira
Mancera, Paulo Fernando de Arruma
dc.subject.por.fl_str_mv Modelos matemáticos
Cancer
topic Modelos matemáticos
Cancer
Mathematical models
CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
CNPQ::CIENCIAS EXATAS E DA TERRA::MATEMATICA::MATEMATICA APLICADA
dc.subject.eng.fl_str_mv Mathematical models
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
CNPQ::CIENCIAS EXATAS E DA TERRA::MATEMATICA::MATEMATICA APLICADA
description Cancer is a huge world health problem, what is expanding researches on a wide variety of subjects associated with its onset, evolution and treatment. In this work, we perfom a detailed study on the tumor growth mechanisms in order to build a model to describe the evolution of tumors at different scales. We develop a multiscale hybrid model for the avascular tumor growth which integrates phenomena that occur at two scales, the cellular and tissue scales. The cellular scale is described through an agent based model, allowing to deal with each cell individually and to describe the cell behavior in the microenvironment. We represent the nutrient transport in the microenvironment at the tissue scale through a reaction-diffusion partial differential equation. The oxygen is considered the only source of nutrients and its uptake rate plays the role of the bridge between scales. The model encompasses tumor and normal cells, but the latter are kept in homeostasis. Phenotypic states differentiate tumor cells (quiescent, proliferative, apoptotic, hypoxic and necrotic), which may change in accordance with microenvironment conditions. The tumor growth dynamics is ruled by phenotypic transitions, which are mainly deterministic. However, the transitions from quiescent to proliferative and apoptotic states are stochastic. Each cell movement is driven by the force balance among cells, according to Newton's second law. By including normal cells, the tumor growth strongly depends on the mechanical interactions in the microenvironment. To describe these effects, we develop a model to represent the compressive stress accumulation within the growing tumor, which acts by inhibiting further cell proliferation. Computational simulations are conducted to demonstrate that the developed model can adequately describe the complex mechanisms of tumor dynamics, including growth arrest in avascular tumors.
publishDate 2016
dc.date.accessioned.fl_str_mv 2016-11-10T17:26:09Z
dc.date.issued.fl_str_mv 2016-02-29
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv ROCHA, H. L. Modelagem híbrida multiescala para o crescimento tumoral, 2016, xi, 57 f. Dissertação, Programa de Pós-Graduação de Modelagem Computacional, Laboratório Nacional de Computação Científica, Petrópolis, 2016.
dc.identifier.uri.fl_str_mv https://tede.lncc.br/handle/tede/236
identifier_str_mv ROCHA, H. L. Modelagem híbrida multiescala para o crescimento tumoral, 2016, xi, 57 f. Dissertação, Programa de Pós-Graduação de Modelagem Computacional, Laboratório Nacional de Computação Científica, Petrópolis, 2016.
url https://tede.lncc.br/handle/tede/236
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