Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga

Detalhes bibliográficos
Autor(a) principal: Cecconi, Guilherme Falato
Data de Publicação: 2018
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da Uninove
Texto Completo: http://bibliotecatede.uninove.br/handle/tede/2990
Resumo: Bladder cancer (BC) is one of the most common neoplasms in man, accounting for high morbidity and mortality, even having classic therapeutic protocols. Immunotherapy is emerging as a promising strategy for the treatment of BC. Among the candidate molecules is indoleamine 2,3-dioxygenase (IDO), an enzyme recognized as immunomodulatory since it has been described in placenta protecting the embryo against the maternal immune system. IDO chemical inhibitors have been proposed in the area of oncology so that the immune escape of tumors is overcome. Since INF-ɤ is its main inductor, IDO acts by the activation of the aryl hydrocarbon receptor (AHR). However, there is little IDO study in bladder cancer and studies investigating the expression of IDO in general tumors show that the enzyme is present in most neoplasms, but there is high variability among individuals. The aim of the present study was to analyze the expression of IDO, INF-ɤ, AHR and CYP1A1 (marker of AHR activation) in normal and non-muscle invasive bladder tumor (CBNMI) and invasive muscle (CBMI) , in order to verify the possibility of IDO being targeted as a therapeutic target in this type of neoplasia. The method was based on the analysis of databases (series) of microarray published in NCBI (National Center of Biotechnology Information) and made via GEO Datasets (Gene Expression Omnibus). For this, the descriptor "Bladder cancer" was used. At first, we selected series that offered analysis of normal human tissues for the validation of the correlation between the genes analyzed. Next, we selected series that offered analysis of normal bladder versus bladder cancer or between CBNMI versus CBMI. Of 3,110 series selected with the descriptor "bladder cancer", 123 were microarray studies and 12 offered the analyzes of interest. The statistical analysis was performed by the GEO2R application offered by the GEO Datasets platform, which uses the statistical method. Correlation and survival analyzes (only one series) were performed by the SPSS program version 22. As results, there is a positive correlation between the genes analyzed for normal tissues such as placenta, lymph node and intestine. Of the eight series that offered comparison between normal bladder and bladder cancer, none showed differences in the expression of IDO, INF-ɤ and CYP1A1. In only one series was there an increase in AHR in bladder cancer. The same profile was found by comparing normal bladder tissue versus CBNMI or CBMI. In the comparison between CBNMI and CBMI, there was an increase in the expression of IDO in two of the 8 series, and CYP1A1 was also increased in one of them. In correlation analysis, in only approximately 50% of the series the IDO correlated with INF-ɤ, AHR and CYP1A1. There was a negative correlation between IDO expression and patient survival in one of the series, but the Kaplan Meier analysis showed no difference between the group with low IDO expression and the high expression group. The results demonstrate that IDO expression may be increased in BC, but there is great variability among individuals. In BC, the relationship between the genes studied does not hold steady as it does in normal tissues. The study points to the importance of characterizing the IDO-AHR pathway in patients with BC in order to institute personalized immunotherapy.
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spelling Dellê, Humbertohttp://lattes.cnpq.br/7435662740477057Dellê, Humbertohttp://lattes.cnpq.br/7435662740477057Peron, Jean Pierre Schatzmannhttp://lattes.cnpq.br/8556721425351491Camacho, Camachohttp://lattes.cnpq.br/1832800364435894http://lattes.cnpq.br/9902577536615302Cecconi, Guilherme Falato2022-07-21T15:08:22Z2018-05-09Cecconi, Guilherme Falato. Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga. 2018. 54 f. Dissertação( Programa de Mestrado em Medicina) - Universidade Nove de Julho, São Paulo.http://bibliotecatede.uninove.br/handle/tede/2990Bladder cancer (BC) is one of the most common neoplasms in man, accounting for high morbidity and mortality, even having classic therapeutic protocols. Immunotherapy is emerging as a promising strategy for the treatment of BC. Among the candidate molecules is indoleamine 2,3-dioxygenase (IDO), an enzyme recognized as immunomodulatory since it has been described in placenta protecting the embryo against the maternal immune system. IDO chemical inhibitors have been proposed in the area of oncology so that the immune escape of tumors is overcome. Since INF-ɤ is its main inductor, IDO acts by the activation of the aryl hydrocarbon receptor (AHR). However, there is little IDO study in bladder cancer and studies investigating the expression of IDO in general tumors show that the enzyme is present in most neoplasms, but there is high variability among individuals. The aim of the present study was to analyze the expression of IDO, INF-ɤ, AHR and CYP1A1 (marker of AHR activation) in normal and non-muscle invasive bladder tumor (CBNMI) and invasive muscle (CBMI) , in order to verify the possibility of IDO being targeted as a therapeutic target in this type of neoplasia. The method was based on the analysis of databases (series) of microarray published in NCBI (National Center of Biotechnology Information) and made via GEO Datasets (Gene Expression Omnibus). For this, the descriptor "Bladder cancer" was used. At first, we selected series that offered analysis of normal human tissues for the validation of the correlation between the genes analyzed. Next, we selected series that offered analysis of normal bladder versus bladder cancer or between CBNMI versus CBMI. Of 3,110 series selected with the descriptor "bladder cancer", 123 were microarray studies and 12 offered the analyzes of interest. The statistical analysis was performed by the GEO2R application offered by the GEO Datasets platform, which uses the statistical method. Correlation and survival analyzes (only one series) were performed by the SPSS program version 22. As results, there is a positive correlation between the genes analyzed for normal tissues such as placenta, lymph node and intestine. Of the eight series that offered comparison between normal bladder and bladder cancer, none showed differences in the expression of IDO, INF-ɤ and CYP1A1. In only one series was there an increase in AHR in bladder cancer. The same profile was found by comparing normal bladder tissue versus CBNMI or CBMI. In the comparison between CBNMI and CBMI, there was an increase in the expression of IDO in two of the 8 series, and CYP1A1 was also increased in one of them. In correlation analysis, in only approximately 50% of the series the IDO correlated with INF-ɤ, AHR and CYP1A1. There was a negative correlation between IDO expression and patient survival in one of the series, but the Kaplan Meier analysis showed no difference between the group with low IDO expression and the high expression group. The results demonstrate that IDO expression may be increased in BC, but there is great variability among individuals. In BC, the relationship between the genes studied does not hold steady as it does in normal tissues. The study points to the importance of characterizing the IDO-AHR pathway in patients with BC in order to institute personalized immunotherapy.O câncer de bexiga é uma das neoplasias mais comuns no homem, sendo responsável por alta morbidade e mortalidade, mesmo frente aos clássicos protocolos terapêuticos. A imunoterapia está emergindo como uma estratégia promissora para o tratamento do câncer de bexiga. Dentre as moléculas candidatas está a indoleamina 2,3-dioxigenase (IDO), uma enzima reconhecida como imunomoduladora desde que foi descrita em placenta protegendo o embrião contra o sistema imune materno. Inibidores químicos da IDO têm sido propostos na área de oncologia para que o escape imunológico dos tumores seja vencido. Sendo o INF-ɤ seu principal indutor, a IDO atua, dentre outros mecanismos, pelo acionamento do receptor de hidrocarboneto de arila (AHR). Contudo, há pouco estudo da IDO em câncer de bexiga e os estudos que investigaram a expressão de IDO em tumores gerais mostram que a enzima está presente na maioria das neoplasias, porém há alta variabilidade entre indivíduos. O objetivo do presente estudo foi analisar a expressão de IDO, INF-ɤ, AHR e CYP1A1 (marcador da ativação do AHR) em espécimes de tecido vesical normal e de tumor de bexiga não-músculo invasivo (CBNMI) e músculo invasivo (CBMI), a fim de verificar a possibilidade da IDO ser apontada como alvo terapêutico neste tipo de neoplasia. A metodologia baseou-se na análise de bancos de dados (séries) de microarray publicados no NCBI (National Center of Biotechnology Information) e viabilizados via GEO Datasets (Gene Expression Omnibus). Para tanto, foi usado o descritor “Bladder cancer”. Em um primeiro momento, foram selecionadas séries que oferecessem análise de tecidos humanos normais para a validação da correlação entre os genes analisados. Em seguida, foram selecionadas séries que oferecessem análise de tecido vesical normal versus câncer de bexiga ou entre CBNMI versus CBMI. De 3.110 séries selecionadas com o descritor “bladder cancer”, 123 eram estudos de microarray e 12 ofereceram as análises de interesse. A análise estatística foi realizada pelo aplicativo GEO2R oferecido pela própria plataforma do GEO Datasets, que usa o método estatístico limma 3.26.8. Análises de correlação e de sobrevida (apenas uma série) foram realizadas pelo programa SPSS versão 22. Como resultados, há correlação positiva entre os genes analisados tratando-se de tecidos normais, tais como placenta, linfonodo e intestino. Das oito séries que ofereceram comparação entre tecido vesical normal e câncer de bexiga, nenhuma apresentou diferença na expressão de IDO, INF-ɤ e CYP1A1. Em apenas uma série houve aumento de AHR em câncer de bexiga. O mesmo perfil foi encontrado comparando-se tecido vesical normal versus CBNMI ou CBMI. Na comparação entre CBNMI e CBMI, houve aumento da expressão de IDO em duas das 8 séries, sendo aumentado o CYP1A1 também em uma delas. Na análise de correlação, em apenas aproximadamente 50% das séries a IDO correlacionou-se com INF-ɤ, AHR e CYP1A1. Houve correlação negativa entre a expressão de IDO e a sobrevida dos pacientes em uma das séries, porém a análise de Kaplan Meier não mostrou diferença entre o grupo com baixa expressão de IDO e o grupo com alta expressão. Os resultados demonstram que a expressão de IDO pode estar aumentada no câncer de bexiga, porém há grande variabilidade entre indivíduos. No câncer de bexiga, a relação entre os genes estudados não se mantém de forma estável como ocorre em tecidos normais. O estudo aponta para a importância da caracterização da via IDO-AHR nos pacientes com câncer de bexiga, a fim de instituir uma imunoterapia personalizada.Submitted by Nadir Basilio (nadirsb@uninove.br) on 2022-07-21T15:08:22Z No. of bitstreams: 1 Guilherme Falato Cecconi.pdf: 909490 bytes, checksum: 07e181c91782132b133f308d339e34e3 (MD5)Made available in DSpace on 2022-07-21T15:08:22Z (GMT). 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dc.title.por.fl_str_mv Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
dc.title.alternative.eng.fl_str_mv Meta-analysis of microarray banks to expression evaluate of indoleamine 2,3-dioxygenase and related genes to the bladder cancer
title Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
spellingShingle Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
Cecconi, Guilherme Falato
câncer de bexiga
imunomodulação
indoleamina 2,3-dioxigenase
triptofano
bladder câncer
immunomodulation
indoleamine 2,3-dioxygenase
tryptophan
CIENCIAS DA SAUDE
title_short Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
title_full Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
title_fullStr Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
title_full_unstemmed Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
title_sort Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga
author Cecconi, Guilherme Falato
author_facet Cecconi, Guilherme Falato
author_role author
dc.contributor.advisor1.fl_str_mv Dellê, Humberto
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7435662740477057
dc.contributor.referee1.fl_str_mv Dellê, Humberto
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/7435662740477057
dc.contributor.referee2.fl_str_mv Peron, Jean Pierre Schatzmann
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/8556721425351491
dc.contributor.referee3.fl_str_mv Camacho, Camacho
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/1832800364435894
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9902577536615302
dc.contributor.author.fl_str_mv Cecconi, Guilherme Falato
contributor_str_mv Dellê, Humberto
Dellê, Humberto
Peron, Jean Pierre Schatzmann
Camacho, Camacho
dc.subject.por.fl_str_mv câncer de bexiga
imunomodulação
indoleamina 2,3-dioxigenase
triptofano
topic câncer de bexiga
imunomodulação
indoleamina 2,3-dioxigenase
triptofano
bladder câncer
immunomodulation
indoleamine 2,3-dioxygenase
tryptophan
CIENCIAS DA SAUDE
dc.subject.eng.fl_str_mv bladder câncer
immunomodulation
indoleamine 2,3-dioxygenase
tryptophan
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE
description Bladder cancer (BC) is one of the most common neoplasms in man, accounting for high morbidity and mortality, even having classic therapeutic protocols. Immunotherapy is emerging as a promising strategy for the treatment of BC. Among the candidate molecules is indoleamine 2,3-dioxygenase (IDO), an enzyme recognized as immunomodulatory since it has been described in placenta protecting the embryo against the maternal immune system. IDO chemical inhibitors have been proposed in the area of oncology so that the immune escape of tumors is overcome. Since INF-ɤ is its main inductor, IDO acts by the activation of the aryl hydrocarbon receptor (AHR). However, there is little IDO study in bladder cancer and studies investigating the expression of IDO in general tumors show that the enzyme is present in most neoplasms, but there is high variability among individuals. The aim of the present study was to analyze the expression of IDO, INF-ɤ, AHR and CYP1A1 (marker of AHR activation) in normal and non-muscle invasive bladder tumor (CBNMI) and invasive muscle (CBMI) , in order to verify the possibility of IDO being targeted as a therapeutic target in this type of neoplasia. The method was based on the analysis of databases (series) of microarray published in NCBI (National Center of Biotechnology Information) and made via GEO Datasets (Gene Expression Omnibus). For this, the descriptor "Bladder cancer" was used. At first, we selected series that offered analysis of normal human tissues for the validation of the correlation between the genes analyzed. Next, we selected series that offered analysis of normal bladder versus bladder cancer or between CBNMI versus CBMI. Of 3,110 series selected with the descriptor "bladder cancer", 123 were microarray studies and 12 offered the analyzes of interest. The statistical analysis was performed by the GEO2R application offered by the GEO Datasets platform, which uses the statistical method. Correlation and survival analyzes (only one series) were performed by the SPSS program version 22. As results, there is a positive correlation between the genes analyzed for normal tissues such as placenta, lymph node and intestine. Of the eight series that offered comparison between normal bladder and bladder cancer, none showed differences in the expression of IDO, INF-ɤ and CYP1A1. In only one series was there an increase in AHR in bladder cancer. The same profile was found by comparing normal bladder tissue versus CBNMI or CBMI. In the comparison between CBNMI and CBMI, there was an increase in the expression of IDO in two of the 8 series, and CYP1A1 was also increased in one of them. In correlation analysis, in only approximately 50% of the series the IDO correlated with INF-ɤ, AHR and CYP1A1. There was a negative correlation between IDO expression and patient survival in one of the series, but the Kaplan Meier analysis showed no difference between the group with low IDO expression and the high expression group. The results demonstrate that IDO expression may be increased in BC, but there is great variability among individuals. In BC, the relationship between the genes studied does not hold steady as it does in normal tissues. The study points to the importance of characterizing the IDO-AHR pathway in patients with BC in order to institute personalized immunotherapy.
publishDate 2018
dc.date.issued.fl_str_mv 2018-05-09
dc.date.accessioned.fl_str_mv 2022-07-21T15:08:22Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv Cecconi, Guilherme Falato. Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga. 2018. 54 f. Dissertação( Programa de Mestrado em Medicina) - Universidade Nove de Julho, São Paulo.
dc.identifier.uri.fl_str_mv http://bibliotecatede.uninove.br/handle/tede/2990
identifier_str_mv Cecconi, Guilherme Falato. Meta-análise de bancos de microarray para avaliação da expressão de indoleamina 2,3-dioxigenase e de genes relacionados à via do receptor de hidrocarboneto de arila em câncer de bexiga. 2018. 54 f. Dissertação( Programa de Mestrado em Medicina) - Universidade Nove de Julho, São Paulo.
url http://bibliotecatede.uninove.br/handle/tede/2990
dc.language.iso.fl_str_mv por
language por
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