Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds

Detalhes bibliográficos
Autor(a) principal: Lopes, Filipa Alexandra Afonso
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/117534
Resumo: Diabetes melitus is a metabolic disease characterized by a lack of insulin production and/or increased cellular resistance to insulin, leading to high levels of glucose in bloodstream (hyperglycaemia). Glycogen phosphorylase (GP) is a key enzyme involved in the cascade responsible for the breakdown of glycogen to glucose-1-phosphate. GP is a validated target for the treatment of diabetes as some GP-specific inhibitors lower blood glucose levels in vivo. A computational study carried out by our collaborators at the Faculty of Sciences, University of Porto, has identified possible compounds with high inhibitory capacity for GP. The main aim of this dissertation was to follow up these compounds and experimentally validate the theoretical data. To achieve this, the first objective was the optimization of the heterologous expression and purification of human liver GP to obtain the recombinant protein in its less active form (GPb), and in its most active form (GPa) through phosphorylation. Several thermal shift assays (TSA) were carried out and were decisive in choosing the best conditions for the stabilization of both proteins. Microscale Thermophoresis (MST) was applied to quantify the interactions of human GPb and several compounds. Dissociation constants, Kd, were determined for the flavonoids genistein (1.2 ± 0.4 µM), 8-prenylnaringenin (4.1 ± 1.2 µM) and 8-prenylgenistein (7.4 ± 3.7 µM). Overall, these results agree with the theoretical data calculated by Molecular Dynamics and Free-energy perturbations, thus validating the binding affinity of GP for these compounds. Kinetic assays to determine the enzyme activity are ongoing, but preliminary assays with the two forms of the enzyme showed that GPa has a high activity while GPb did not show activity. An assay with GPa and caffeine (inhibitor) showed reduced enzyme activity. These results have shown to be quite promising and it is intended in the future to determine the parameters V0, Vm and Km of the reaction, and to determine the protein inhibition constants with the different inhibitors to follow up the MST data. The combined theoretical and experimental data suggested the flavonoids genistein, 8PN and 8PG as potential inhibitory compounds for GP and may, in the future, be explored for the treatment of diabetes.
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spelling Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural CompoundsType II DiabetesGlycogen PhosphorylaseInhibitionMicroScale ThermophoresisDomínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e TecnologiasDiabetes melitus is a metabolic disease characterized by a lack of insulin production and/or increased cellular resistance to insulin, leading to high levels of glucose in bloodstream (hyperglycaemia). Glycogen phosphorylase (GP) is a key enzyme involved in the cascade responsible for the breakdown of glycogen to glucose-1-phosphate. GP is a validated target for the treatment of diabetes as some GP-specific inhibitors lower blood glucose levels in vivo. A computational study carried out by our collaborators at the Faculty of Sciences, University of Porto, has identified possible compounds with high inhibitory capacity for GP. The main aim of this dissertation was to follow up these compounds and experimentally validate the theoretical data. To achieve this, the first objective was the optimization of the heterologous expression and purification of human liver GP to obtain the recombinant protein in its less active form (GPb), and in its most active form (GPa) through phosphorylation. Several thermal shift assays (TSA) were carried out and were decisive in choosing the best conditions for the stabilization of both proteins. Microscale Thermophoresis (MST) was applied to quantify the interactions of human GPb and several compounds. Dissociation constants, Kd, were determined for the flavonoids genistein (1.2 ± 0.4 µM), 8-prenylnaringenin (4.1 ± 1.2 µM) and 8-prenylgenistein (7.4 ± 3.7 µM). Overall, these results agree with the theoretical data calculated by Molecular Dynamics and Free-energy perturbations, thus validating the binding affinity of GP for these compounds. Kinetic assays to determine the enzyme activity are ongoing, but preliminary assays with the two forms of the enzyme showed that GPa has a high activity while GPb did not show activity. An assay with GPa and caffeine (inhibitor) showed reduced enzyme activity. These results have shown to be quite promising and it is intended in the future to determine the parameters V0, Vm and Km of the reaction, and to determine the protein inhibition constants with the different inhibitors to follow up the MST data. The combined theoretical and experimental data suggested the flavonoids genistein, 8PN and 8PG as potential inhibitory compounds for GP and may, in the future, be explored for the treatment of diabetes.Os diabetes melitus são uma doença metabólica caracterizada pela diminuição da produção ou resistência celular à insulina que leva ao aumento dos níveis de glucose na corrente sanguínea (hiperglicemia). A Glicogénio Fosforilase (GP) é uma enzima-chave envolvida na cascata responsável pela degradação do glicogénio em glucose-1-fosfato. Esta enzima é considerada um alvo validado para o controlo dos diabetes, uma vez que alguns inibidores específicos para a GP diminuem os níveis de glucose no sangue in vivo. Um estudo computacional, realizado pelos colaboradores da Faculdade de Ciências da Universidade do Porto, identificou possíveis compostos com elevada capacidade inibitória para a GP, sendo o principal objetivo da dissertação a validação experimental destes dados. Assim, o primeiro passo foi a otimização da expressão heteróloga e purificação da GP do fígado humano para obter a proteína recombinante na sua forma menos ativa (GPb) e na sua forma mais ativa (GPa) através de fosforilação. Foram efetuados vários ensaios de TSA que foram determinantes na escolha das melhores condições para a estabilização de ambas as proteínas. Os ensaios de Termoforese em Microescala (MST) permitiram quantificar as interações da GPb humana e vários compostos. As constantes de dissociação, Kd, foram determinadas para os flavonóides genisteina (1.2 ± 0.4 µM), 8-prenylnaringenin (4.1 ± 1.2 µM) e 8-prenylgenistein (7.4 ± 3.7 µM). Estes resultados mostraram-se concordantes com os dados teóricos calculados por Dinâmica Molecular e Perturbação de Energia Livre, validando a afinidade da ligação da GP para estes compostos. Ensaios cinéticos para determinar a atividade enzimática ainda estão a decorrer, mas ensaios preliminares com as duas formas da enzima mostraram que a GPa apresenta uma elevada atividade quando comparada com a GPb que não apresentou atividade. Um ensaio com a GPa e a cafeina (inibidor) mostrou redução da atividade da enzima. Estes resultados revelaram-se bastante promissores e pretende-se de futuro determinar os parâmetros V0, Vm e Km da reação, assim como determinar as constates de inibição da proteína com os diferentes inibidores para acompanhar os dados de MST. Os dados teóricos e experimentais sugerem que os flavonóides genistein, 8PN e 8PG são potenciais compostos inibitórios para a GP e que podem, no futuro, ser explorados para o tratamento dos diabetes.Correia, MárciaPalma, Maria AngelinaRUNLopes, Filipa Alexandra Afonso2021-05-12T09:54:31Z2021-022021-02-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10362/117534enginfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:00:35Zoai:run.unl.pt:10362/117534Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:43:38.237625Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
title Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
spellingShingle Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
Lopes, Filipa Alexandra Afonso
Type II Diabetes
Glycogen Phosphorylase
Inhibition
MicroScale Thermophoresis
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
title_short Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
title_full Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
title_fullStr Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
title_full_unstemmed Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
title_sort Diabetes Type II Regulation – Inhibitory Potential of hlGP with Different Natural Compounds
author Lopes, Filipa Alexandra Afonso
author_facet Lopes, Filipa Alexandra Afonso
author_role author
dc.contributor.none.fl_str_mv Correia, Márcia
Palma, Maria Angelina
RUN
dc.contributor.author.fl_str_mv Lopes, Filipa Alexandra Afonso
dc.subject.por.fl_str_mv Type II Diabetes
Glycogen Phosphorylase
Inhibition
MicroScale Thermophoresis
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
topic Type II Diabetes
Glycogen Phosphorylase
Inhibition
MicroScale Thermophoresis
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
description Diabetes melitus is a metabolic disease characterized by a lack of insulin production and/or increased cellular resistance to insulin, leading to high levels of glucose in bloodstream (hyperglycaemia). Glycogen phosphorylase (GP) is a key enzyme involved in the cascade responsible for the breakdown of glycogen to glucose-1-phosphate. GP is a validated target for the treatment of diabetes as some GP-specific inhibitors lower blood glucose levels in vivo. A computational study carried out by our collaborators at the Faculty of Sciences, University of Porto, has identified possible compounds with high inhibitory capacity for GP. The main aim of this dissertation was to follow up these compounds and experimentally validate the theoretical data. To achieve this, the first objective was the optimization of the heterologous expression and purification of human liver GP to obtain the recombinant protein in its less active form (GPb), and in its most active form (GPa) through phosphorylation. Several thermal shift assays (TSA) were carried out and were decisive in choosing the best conditions for the stabilization of both proteins. Microscale Thermophoresis (MST) was applied to quantify the interactions of human GPb and several compounds. Dissociation constants, Kd, were determined for the flavonoids genistein (1.2 ± 0.4 µM), 8-prenylnaringenin (4.1 ± 1.2 µM) and 8-prenylgenistein (7.4 ± 3.7 µM). Overall, these results agree with the theoretical data calculated by Molecular Dynamics and Free-energy perturbations, thus validating the binding affinity of GP for these compounds. Kinetic assays to determine the enzyme activity are ongoing, but preliminary assays with the two forms of the enzyme showed that GPa has a high activity while GPb did not show activity. An assay with GPa and caffeine (inhibitor) showed reduced enzyme activity. These results have shown to be quite promising and it is intended in the future to determine the parameters V0, Vm and Km of the reaction, and to determine the protein inhibition constants with the different inhibitors to follow up the MST data. The combined theoretical and experimental data suggested the flavonoids genistein, 8PN and 8PG as potential inhibitory compounds for GP and may, in the future, be explored for the treatment of diabetes.
publishDate 2021
dc.date.none.fl_str_mv 2021-05-12T09:54:31Z
2021-02
2021-02-01T00:00:00Z
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