Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains

Detalhes bibliográficos
Autor(a) principal: Guimarães, Pedro M. R.
Data de Publicação: 2008
Outros Autores: Le Berre, V., Sokol, Serguei, François, J., Teixeira, J. A., Domingues, Lucília
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/8669
Resumo: The engineering of Saccharomyces cerevisiae strains for lactose utilization has been attempted with the intent of developing high productivity processes for alcoholic fermentation of cheese whey. A recombinant S. cerevisiae flocculent strain that efficiently ferments lactose to ethanol was previously obtained by evolutionary engineering of an original recombinant that displayed poor lactose fermentation performance. We compared the transcriptomes of the original and the evolved recombinant strains growing in lactose, using cDNA microarrays. Microarray data revealed 173 genes whose expression levels differed more than 1.5-fold. About half of these genes were related to RNA-mediated transposition. We also found genes involved in DNA repair and recombination mechanisms, response to stress, chromatin remodeling, cell cycle control, mitosis regulation, glycolysis and alcoholic fermentation. These transcriptomic data are in agreement with some of the previously identified physiological and molecular differences between the recombinants, and point to further hypotheses to explain those differences.
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spelling Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strainscDNA microarraysEvolutionary engineeringLactose fermentationRecombinant Saccharomyces cerevisiaeThe engineering of Saccharomyces cerevisiae strains for lactose utilization has been attempted with the intent of developing high productivity processes for alcoholic fermentation of cheese whey. A recombinant S. cerevisiae flocculent strain that efficiently ferments lactose to ethanol was previously obtained by evolutionary engineering of an original recombinant that displayed poor lactose fermentation performance. We compared the transcriptomes of the original and the evolved recombinant strains growing in lactose, using cDNA microarrays. Microarray data revealed 173 genes whose expression levels differed more than 1.5-fold. About half of these genes were related to RNA-mediated transposition. We also found genes involved in DNA repair and recombination mechanisms, response to stress, chromatin remodeling, cell cycle control, mitosis regulation, glycolysis and alcoholic fermentation. These transcriptomic data are in agreement with some of the previously identified physiological and molecular differences between the recombinants, and point to further hypotheses to explain those differences.(undefined)Wiley-VCH VerlagUniversidade do MinhoGuimarães, Pedro M. R.Le Berre, V.Sokol, SergueiFrançois, J.Teixeira, J. A.Domingues, Lucília2008-122008-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/8669eng“Biotechnology Journal”. ISSN 1860-6768. 3:12 (Dec. 2008) 1591–1597.1860-676810.1002/biot.20080011119039778www.biotechnology-journal.cominfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:17:32Zoai:repositorium.sdum.uminho.pt:1822/8669Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:10:12.103591Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
title Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
spellingShingle Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
Guimarães, Pedro M. R.
cDNA microarrays
Evolutionary engineering
Lactose fermentation
Recombinant Saccharomyces cerevisiae
title_short Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
title_full Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
title_fullStr Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
title_full_unstemmed Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
title_sort Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains
author Guimarães, Pedro M. R.
author_facet Guimarães, Pedro M. R.
Le Berre, V.
Sokol, Serguei
François, J.
Teixeira, J. A.
Domingues, Lucília
author_role author
author2 Le Berre, V.
Sokol, Serguei
François, J.
Teixeira, J. A.
Domingues, Lucília
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Guimarães, Pedro M. R.
Le Berre, V.
Sokol, Serguei
François, J.
Teixeira, J. A.
Domingues, Lucília
dc.subject.por.fl_str_mv cDNA microarrays
Evolutionary engineering
Lactose fermentation
Recombinant Saccharomyces cerevisiae
topic cDNA microarrays
Evolutionary engineering
Lactose fermentation
Recombinant Saccharomyces cerevisiae
description The engineering of Saccharomyces cerevisiae strains for lactose utilization has been attempted with the intent of developing high productivity processes for alcoholic fermentation of cheese whey. A recombinant S. cerevisiae flocculent strain that efficiently ferments lactose to ethanol was previously obtained by evolutionary engineering of an original recombinant that displayed poor lactose fermentation performance. We compared the transcriptomes of the original and the evolved recombinant strains growing in lactose, using cDNA microarrays. Microarray data revealed 173 genes whose expression levels differed more than 1.5-fold. About half of these genes were related to RNA-mediated transposition. We also found genes involved in DNA repair and recombination mechanisms, response to stress, chromatin remodeling, cell cycle control, mitosis regulation, glycolysis and alcoholic fermentation. These transcriptomic data are in agreement with some of the previously identified physiological and molecular differences between the recombinants, and point to further hypotheses to explain those differences.
publishDate 2008
dc.date.none.fl_str_mv 2008-12
2008-12-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/8669
url http://hdl.handle.net/1822/8669
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv “Biotechnology Journal”. ISSN 1860-6768. 3:12 (Dec. 2008) 1591–1597.
1860-6768
10.1002/biot.200800111
19039778
www.biotechnology-journal.com
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley-VCH Verlag
publisher.none.fl_str_mv Wiley-VCH Verlag
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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