Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection

Detalhes bibliográficos
Autor(a) principal: Silva, Catarina L.
Data de Publicação: 2019
Outros Autores: Olival, Ana, Perestrelo, Rosa, Silva, Pedro, Tomás, Helena, Câmara, José S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.13/4330
Resumo: : Breast cancer (BC) remains the second leading cause of death among women worldwide. An emerging approach based on the identification of endogenous metabolites (EMs) and the establishment of the metabolomic fingerprint of biological fluids constitutes a new frontier in medical diagnostics and a promising strategy to differentiate cancer patients from healthy individuals. In this work we aimed to establish the urinary metabolomic patterns from 40 BC patients and 38 healthy controls (CTL) using proton nuclear magnetic resonance spectroscopy (1H-NMR) as a powerful approach to identify a set of BC-specific metabolites which might be employed in the diagnosis of BC. Orthogonal partial least squares-discriminant analysis (OPLS-DA) was applied to a 1H-NMR processed data matrix. Metabolomic patterns distinguished BC from CTL urine samples, suggesting a unique metabolite profile for each investigated group. A total of 10 metabolites exhibited the highest contribution towards discriminating BC patients from healthy controls (variable importance in projection (VIP) >1, p < 0.05). The discrimination efficiency and accuracy of the urinary EMs were ascertained by receiver operating characteristic curve (ROC) analysis that allowed the identification of some metabolites with the highest sensitivities and specificities to discriminate BC patients from healthy controls (e.g. creatine, glycine, trimethylamine N-oxide, and serine). The metabolomic pathway analysis indicated several metabolism pathway disruptions, including amino acid and carbohydrate metabolisms, in BC patients, namely, glycine and butanoate metabolisms. The obtained results support the high throughput potential of NMR-based urinary metabolomics patterns in discriminating BC patients from CTL. Further investigations could unravel novel mechanistic insights into disease pathophysiology, monitor disease recurrence, and predict patient response towards therapy.
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spelling Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detectionBreast cancer1H NMRUrineMetabolomicsChemometric tools.Faculdade de Ciências Exatas e da EngenhariaCentro de Química da Madeira: Breast cancer (BC) remains the second leading cause of death among women worldwide. An emerging approach based on the identification of endogenous metabolites (EMs) and the establishment of the metabolomic fingerprint of biological fluids constitutes a new frontier in medical diagnostics and a promising strategy to differentiate cancer patients from healthy individuals. In this work we aimed to establish the urinary metabolomic patterns from 40 BC patients and 38 healthy controls (CTL) using proton nuclear magnetic resonance spectroscopy (1H-NMR) as a powerful approach to identify a set of BC-specific metabolites which might be employed in the diagnosis of BC. Orthogonal partial least squares-discriminant analysis (OPLS-DA) was applied to a 1H-NMR processed data matrix. Metabolomic patterns distinguished BC from CTL urine samples, suggesting a unique metabolite profile for each investigated group. A total of 10 metabolites exhibited the highest contribution towards discriminating BC patients from healthy controls (variable importance in projection (VIP) >1, p < 0.05). The discrimination efficiency and accuracy of the urinary EMs were ascertained by receiver operating characteristic curve (ROC) analysis that allowed the identification of some metabolites with the highest sensitivities and specificities to discriminate BC patients from healthy controls (e.g. creatine, glycine, trimethylamine N-oxide, and serine). The metabolomic pathway analysis indicated several metabolism pathway disruptions, including amino acid and carbohydrate metabolisms, in BC patients, namely, glycine and butanoate metabolisms. The obtained results support the high throughput potential of NMR-based urinary metabolomics patterns in discriminating BC patients from CTL. Further investigations could unravel novel mechanistic insights into disease pathophysiology, monitor disease recurrence, and predict patient response towards therapy.MDPIDigitUMaSilva, Catarina L.Olival, AnaPerestrelo, RosaSilva, PedroTomás, HelenaCâmara, José S.2022-06-15T10:14:53Z20192019-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.13/4330engSilva, C. L., Olival, A., Perestrelo, R., Silva, P., Tomás, H., & Câmara, J. S. (2019). Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection. Metabolites, 9(11), 269. https://doi.org/10.3390/metabo911026910.3390/metabo9110269info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-17T05:58:13Zoai:digituma.uma.pt:10400.13/4330Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:08:15.395805Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
title Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
spellingShingle Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
Silva, Catarina L.
Breast cancer
1H NMR
Urine
Metabolomics
Chemometric tools
.
Faculdade de Ciências Exatas e da Engenharia
Centro de Química da Madeira
title_short Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
title_full Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
title_fullStr Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
title_full_unstemmed Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
title_sort Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection
author Silva, Catarina L.
author_facet Silva, Catarina L.
Olival, Ana
Perestrelo, Rosa
Silva, Pedro
Tomás, Helena
Câmara, José S.
author_role author
author2 Olival, Ana
Perestrelo, Rosa
Silva, Pedro
Tomás, Helena
Câmara, José S.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv DigitUMa
dc.contributor.author.fl_str_mv Silva, Catarina L.
Olival, Ana
Perestrelo, Rosa
Silva, Pedro
Tomás, Helena
Câmara, José S.
dc.subject.por.fl_str_mv Breast cancer
1H NMR
Urine
Metabolomics
Chemometric tools
.
Faculdade de Ciências Exatas e da Engenharia
Centro de Química da Madeira
topic Breast cancer
1H NMR
Urine
Metabolomics
Chemometric tools
.
Faculdade de Ciências Exatas e da Engenharia
Centro de Química da Madeira
description : Breast cancer (BC) remains the second leading cause of death among women worldwide. An emerging approach based on the identification of endogenous metabolites (EMs) and the establishment of the metabolomic fingerprint of biological fluids constitutes a new frontier in medical diagnostics and a promising strategy to differentiate cancer patients from healthy individuals. In this work we aimed to establish the urinary metabolomic patterns from 40 BC patients and 38 healthy controls (CTL) using proton nuclear magnetic resonance spectroscopy (1H-NMR) as a powerful approach to identify a set of BC-specific metabolites which might be employed in the diagnosis of BC. Orthogonal partial least squares-discriminant analysis (OPLS-DA) was applied to a 1H-NMR processed data matrix. Metabolomic patterns distinguished BC from CTL urine samples, suggesting a unique metabolite profile for each investigated group. A total of 10 metabolites exhibited the highest contribution towards discriminating BC patients from healthy controls (variable importance in projection (VIP) >1, p < 0.05). The discrimination efficiency and accuracy of the urinary EMs were ascertained by receiver operating characteristic curve (ROC) analysis that allowed the identification of some metabolites with the highest sensitivities and specificities to discriminate BC patients from healthy controls (e.g. creatine, glycine, trimethylamine N-oxide, and serine). The metabolomic pathway analysis indicated several metabolism pathway disruptions, including amino acid and carbohydrate metabolisms, in BC patients, namely, glycine and butanoate metabolisms. The obtained results support the high throughput potential of NMR-based urinary metabolomics patterns in discriminating BC patients from CTL. Further investigations could unravel novel mechanistic insights into disease pathophysiology, monitor disease recurrence, and predict patient response towards therapy.
publishDate 2019
dc.date.none.fl_str_mv 2019
2019-01-01T00:00:00Z
2022-06-15T10:14:53Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.13/4330
url http://hdl.handle.net/10400.13/4330
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Silva, C. L., Olival, A., Perestrelo, R., Silva, P., Tomás, H., & Câmara, J. S. (2019). Untargeted urinary 1H NMR-based metabolomic pattern as a potential platform in breast cancer detection. Metabolites, 9(11), 269. https://doi.org/10.3390/metabo9110269
10.3390/metabo9110269
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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