Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus

Detalhes bibliográficos
Autor(a) principal: Candeias, Rui
Data de Publicação: 2015
Outros Autores: Casado-Amezúa, Pilar, Pearson, G. A., Serrão, Ester, Teixeira, Sara
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/6741
Resumo: Background: Fucus vesiculosus is a brown seaweed dominant on temperate rocky shores of the northern hemisphere and, is typically distributed in the mid-upper intertidal zone. It is an external fertilizer that reproduces sexually, providing an excellent model to address conflicting theories related to mating systems and sexual selection. Microsatellite markers have been reported for several Fucus species, however the genomic libraries from where these markers have been isolated, have originated from two or more species pooled together (F. vesiculosus and F. serratus in one library; F. vesiculosus, F. serratus and Ascophyllum nodosum in a second library), or when the genomic DNA originated from only one species it was from Fucus spiralis. Although these markers cross-amplify F. vesiculosus individuals, the level of polymorphism has been low for relatedness studies. Findings: The microsatellite markers described here were obtained from an enriched genomic library, followed by 454 pyrosequencing. A total of 9 microsatellite markers were tested across 44 individuals from the North of Portugal. The mean number of alleles across loci was 8.7 and the gene diversity 0.67. Conclusions: The high variability displayed by these microsatellite loci should be useful for paternity analysis, assessing variance of reproductive success and in estimations of genetic variation within and between populations.
id RCAP_0c8af91995b324bd453a44b7dd829ad9
oai_identifier_str oai:sapientia.ualg.pt:10400.1/6741
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosusIntertidalMicrosatellitesGenetic diversityFucus vesiculosusBrown macroalgaBackground: Fucus vesiculosus is a brown seaweed dominant on temperate rocky shores of the northern hemisphere and, is typically distributed in the mid-upper intertidal zone. It is an external fertilizer that reproduces sexually, providing an excellent model to address conflicting theories related to mating systems and sexual selection. Microsatellite markers have been reported for several Fucus species, however the genomic libraries from where these markers have been isolated, have originated from two or more species pooled together (F. vesiculosus and F. serratus in one library; F. vesiculosus, F. serratus and Ascophyllum nodosum in a second library), or when the genomic DNA originated from only one species it was from Fucus spiralis. Although these markers cross-amplify F. vesiculosus individuals, the level of polymorphism has been low for relatedness studies. Findings: The microsatellite markers described here were obtained from an enriched genomic library, followed by 454 pyrosequencing. A total of 9 microsatellite markers were tested across 44 individuals from the North of Portugal. The mean number of alleles across loci was 8.7 and the gene diversity 0.67. Conclusions: The high variability displayed by these microsatellite loci should be useful for paternity analysis, assessing variance of reproductive success and in estimations of genetic variation within and between populations.Fundação para a Ciência e TecnologiaEXCL/AAG-GLO/0661/2012Biomed CentralSapientiaCandeias, RuiCasado-Amezúa, PilarPearson, G. A.Serrão, EsterTeixeira, Sara2015-09-08T10:57:43Z2015-03-082015-08-03T15:57:10Z2015-03-08T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/6741engBMC Research Notes. 2015 Mar 08;8(1):7310.1186/s13104-015-1035-xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:17:50Zoai:sapientia.ualg.pt:10400.1/6741Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:59:17.949448Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
title Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
spellingShingle Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
Candeias, Rui
Intertidal
Microsatellites
Genetic diversity
Fucus vesiculosus
Brown macroalga
title_short Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
title_full Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
title_fullStr Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
title_full_unstemmed Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
title_sort Polymorphic microsatellite markers in the brown seaweed Fucus vesiculosus
author Candeias, Rui
author_facet Candeias, Rui
Casado-Amezúa, Pilar
Pearson, G. A.
Serrão, Ester
Teixeira, Sara
author_role author
author2 Casado-Amezúa, Pilar
Pearson, G. A.
Serrão, Ester
Teixeira, Sara
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Candeias, Rui
Casado-Amezúa, Pilar
Pearson, G. A.
Serrão, Ester
Teixeira, Sara
dc.subject.por.fl_str_mv Intertidal
Microsatellites
Genetic diversity
Fucus vesiculosus
Brown macroalga
topic Intertidal
Microsatellites
Genetic diversity
Fucus vesiculosus
Brown macroalga
description Background: Fucus vesiculosus is a brown seaweed dominant on temperate rocky shores of the northern hemisphere and, is typically distributed in the mid-upper intertidal zone. It is an external fertilizer that reproduces sexually, providing an excellent model to address conflicting theories related to mating systems and sexual selection. Microsatellite markers have been reported for several Fucus species, however the genomic libraries from where these markers have been isolated, have originated from two or more species pooled together (F. vesiculosus and F. serratus in one library; F. vesiculosus, F. serratus and Ascophyllum nodosum in a second library), or when the genomic DNA originated from only one species it was from Fucus spiralis. Although these markers cross-amplify F. vesiculosus individuals, the level of polymorphism has been low for relatedness studies. Findings: The microsatellite markers described here were obtained from an enriched genomic library, followed by 454 pyrosequencing. A total of 9 microsatellite markers were tested across 44 individuals from the North of Portugal. The mean number of alleles across loci was 8.7 and the gene diversity 0.67. Conclusions: The high variability displayed by these microsatellite loci should be useful for paternity analysis, assessing variance of reproductive success and in estimations of genetic variation within and between populations.
publishDate 2015
dc.date.none.fl_str_mv 2015-09-08T10:57:43Z
2015-03-08
2015-08-03T15:57:10Z
2015-03-08T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/6741
url http://hdl.handle.net/10400.1/6741
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv BMC Research Notes. 2015 Mar 08;8(1):73
10.1186/s13104-015-1035-x
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Biomed Central
publisher.none.fl_str_mv Biomed Central
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799133214646730752