A novel molecular diagnostic method for the gut content analysis of Philaenus DNA

Detalhes bibliográficos
Autor(a) principal: Rodrigues, Isabel
Data de Publicação: 2022
Outros Autores: Ramos, Vitor, Benhadi-Marín, Jacinto, Moreno, Aránzazu, Fereres, Alberto, Pereira, J.A., Baptista, Paula
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10198/25244
Resumo: Philaenus spumarius is a vector of Xylella fastidiosa, one of the most dangerous plants pathogenic bacteria worldwide. There is currently no control measure against this pathogen. Thus, the development of vector control strategies, like generalist predators, such as spiders, could be essential to limit the spread of this vector-borne pathogen. In this study, a polymerase chain reaction (PCR)-based approach was developed to principally detect DNA of P. spumarius in the spider’s gut. Accordingly, 20 primer pairs, targeting the mitochondrial cytochrome oxidase I (COI) and cytochrome b (cytB) genes, were tested for specificity, sensitivity, and efficiency in detecting P. spumarius DNA. Overall, two primer sets, targeting COI gene (COI_Ph71F/COI_Ph941R) and the cytB gene (cytB_ Ph85F/cytB_Ph635R), showed the highest specificity and sensitivity, being able to amplify 870 pb and 550 bp fragments, respectively, with P. spumarius DNA concentrations 100-fold lower than that of the DNA of non-target species. Among these two primer sets, the cytB_Ph85F/cytB_Ph635R was able to detect P. spumarius in the spider Xysticus acerbus, reaching 50% detection success 82 h after feeding. The feasibility of this primer set to detect predation of P. spumarius by spiders was confirmed in the field, where 20% of the collected spiders presented positive amplifications.
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spelling A novel molecular diagnostic method for the gut content analysis of Philaenus DNAAnimalsDNADNA primersFeeding behavioPhilaenus spumarius is a vector of Xylella fastidiosa, one of the most dangerous plants pathogenic bacteria worldwide. There is currently no control measure against this pathogen. Thus, the development of vector control strategies, like generalist predators, such as spiders, could be essential to limit the spread of this vector-borne pathogen. In this study, a polymerase chain reaction (PCR)-based approach was developed to principally detect DNA of P. spumarius in the spider’s gut. Accordingly, 20 primer pairs, targeting the mitochondrial cytochrome oxidase I (COI) and cytochrome b (cytB) genes, were tested for specificity, sensitivity, and efficiency in detecting P. spumarius DNA. Overall, two primer sets, targeting COI gene (COI_Ph71F/COI_Ph941R) and the cytB gene (cytB_ Ph85F/cytB_Ph635R), showed the highest specificity and sensitivity, being able to amplify 870 pb and 550 bp fragments, respectively, with P. spumarius DNA concentrations 100-fold lower than that of the DNA of non-target species. Among these two primer sets, the cytB_Ph85F/cytB_Ph635R was able to detect P. spumarius in the spider Xysticus acerbus, reaching 50% detection success 82 h after feeding. The feasibility of this primer set to detect predation of P. spumarius by spiders was confirmed in the field, where 20% of the collected spiders presented positive amplifications.This work was supported by the EU H2020 Research Project XF-ACTORS “Xylella fastidiosa Active Containment Through a multidisciplinary-Oriented Research Strategy” (Grant Agreement 727987) and to the Foundation for Science and Technology (FCT, Portugal) for financial support by national funds FCT/MCTES to CIMO (UIDB/00690/2020). Isabel Rodrigues also acknowledges the PhD research Grant (2020.07051.BD) provided by FCT.NatureBiblioteca Digital do IPBRodrigues, IsabelRamos, VitorBenhadi-Marín, JacintoMoreno, AránzazuFereres, AlbertoPereira, J.A.Baptista, Paula2022-03-17T12:11:58Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10198/25244engRodrigues, Isabel; Ramos, Vítor; Benhadi Marín, Jacinto; Moreno, Aránzazu; Fereres, Alberto; Pereira, J.A.; Baptista, Paula (2022). A novel molecular diagnostic method for the gut content analysis of Philaenus DNA. Scientific Reports. ISSN 2045 2322. 12:1, p. 1-92045-232210.1038/s41598-021-04422-1info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-21T10:56:31Zoai:bibliotecadigital.ipb.pt:10198/25244Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T23:15:56.192085Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
title A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
spellingShingle A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
Rodrigues, Isabel
Animals
DNA
DNA primers
Feeding behavio
title_short A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
title_full A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
title_fullStr A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
title_full_unstemmed A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
title_sort A novel molecular diagnostic method for the gut content analysis of Philaenus DNA
author Rodrigues, Isabel
author_facet Rodrigues, Isabel
Ramos, Vitor
Benhadi-Marín, Jacinto
Moreno, Aránzazu
Fereres, Alberto
Pereira, J.A.
Baptista, Paula
author_role author
author2 Ramos, Vitor
Benhadi-Marín, Jacinto
Moreno, Aránzazu
Fereres, Alberto
Pereira, J.A.
Baptista, Paula
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Biblioteca Digital do IPB
dc.contributor.author.fl_str_mv Rodrigues, Isabel
Ramos, Vitor
Benhadi-Marín, Jacinto
Moreno, Aránzazu
Fereres, Alberto
Pereira, J.A.
Baptista, Paula
dc.subject.por.fl_str_mv Animals
DNA
DNA primers
Feeding behavio
topic Animals
DNA
DNA primers
Feeding behavio
description Philaenus spumarius is a vector of Xylella fastidiosa, one of the most dangerous plants pathogenic bacteria worldwide. There is currently no control measure against this pathogen. Thus, the development of vector control strategies, like generalist predators, such as spiders, could be essential to limit the spread of this vector-borne pathogen. In this study, a polymerase chain reaction (PCR)-based approach was developed to principally detect DNA of P. spumarius in the spider’s gut. Accordingly, 20 primer pairs, targeting the mitochondrial cytochrome oxidase I (COI) and cytochrome b (cytB) genes, were tested for specificity, sensitivity, and efficiency in detecting P. spumarius DNA. Overall, two primer sets, targeting COI gene (COI_Ph71F/COI_Ph941R) and the cytB gene (cytB_ Ph85F/cytB_Ph635R), showed the highest specificity and sensitivity, being able to amplify 870 pb and 550 bp fragments, respectively, with P. spumarius DNA concentrations 100-fold lower than that of the DNA of non-target species. Among these two primer sets, the cytB_Ph85F/cytB_Ph635R was able to detect P. spumarius in the spider Xysticus acerbus, reaching 50% detection success 82 h after feeding. The feasibility of this primer set to detect predation of P. spumarius by spiders was confirmed in the field, where 20% of the collected spiders presented positive amplifications.
publishDate 2022
dc.date.none.fl_str_mv 2022-03-17T12:11:58Z
2022
2022-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10198/25244
url http://hdl.handle.net/10198/25244
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Rodrigues, Isabel; Ramos, Vítor; Benhadi Marín, Jacinto; Moreno, Aránzazu; Fereres, Alberto; Pereira, J.A.; Baptista, Paula (2022). A novel molecular diagnostic method for the gut content analysis of Philaenus DNA. Scientific Reports. ISSN 2045 2322. 12:1, p. 1-9
2045-2322
10.1038/s41598-021-04422-1
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature
publisher.none.fl_str_mv Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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