Insights into the selectivity mechanisms of grapevine NIP aquaporins

Detalhes bibliográficos
Autor(a) principal: Sabir, Farzana
Data de Publicação: 2020
Outros Autores: Di Pizzio, Antonella, Loureiro-Dias, M. C., Casini, Angela, Soveral, Graça, Prista, Catarina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.5/20391
Resumo: Nodulin 26-like intrinsic proteins (NIPs) of the plant aquaporin family majorly facilitate the transport of physiologically relevant solutes. The present study intended to investigate how substrate selectivity in grapevine NIPs is influenced by the aromatic/arginine (ar/R) selectivity filter within the pore and the possible underlying mechanisms. A mutational approach was used to interchange the ar/R residues between grapevine NIPs (VvTnNIP1;1 withUniversidade de Lisboa, VvTnNIP6;1, and VvTnNIP2;1 with VvTnNIP5;1). Their functional characterization by stopped-flow spectroscopy in Saccharomyces cerevisiae revealed that mutations in residues of H2/H5 helices in VvTnNIP1;1 and VvTnNIP6;1 caused a general decline in membrane glycerol permeability but did not impart the expected substrate conductivity in the mutants. This result suggests that ar/R filter substitution could alter the NIP channel activity, but it was not su cient to interchange their substrate preferences. Further, homology modeling analyses evidenced that variations in the pore radius combined with the di erences in the channel’s physicochemical properties (hydrophilicity/hydrophobicity) may drive substrate selectivity. Furthermore, yeast growth assays showed that H5 residue substitution alleviated the sensitivity of VvTnNIP2;1 and VvTnNIP5;1 to As, B, and Se, implying importance of H5 sequence for substrate selection. These results contribute to the knowledge of the overall determinants of substrate selectivity in NIPs
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spelling Insights into the selectivity mechanisms of grapevine NIP aquaporinsnodulin 26-like intrinsic proteinsgrapevinear/R selectivity filtersite-directed mutagenesissubstrate selectivityhomology modelingNodulin 26-like intrinsic proteins (NIPs) of the plant aquaporin family majorly facilitate the transport of physiologically relevant solutes. The present study intended to investigate how substrate selectivity in grapevine NIPs is influenced by the aromatic/arginine (ar/R) selectivity filter within the pore and the possible underlying mechanisms. A mutational approach was used to interchange the ar/R residues between grapevine NIPs (VvTnNIP1;1 withUniversidade de Lisboa, VvTnNIP6;1, and VvTnNIP2;1 with VvTnNIP5;1). Their functional characterization by stopped-flow spectroscopy in Saccharomyces cerevisiae revealed that mutations in residues of H2/H5 helices in VvTnNIP1;1 and VvTnNIP6;1 caused a general decline in membrane glycerol permeability but did not impart the expected substrate conductivity in the mutants. This result suggests that ar/R filter substitution could alter the NIP channel activity, but it was not su cient to interchange their substrate preferences. Further, homology modeling analyses evidenced that variations in the pore radius combined with the di erences in the channel’s physicochemical properties (hydrophilicity/hydrophobicity) may drive substrate selectivity. Furthermore, yeast growth assays showed that H5 residue substitution alleviated the sensitivity of VvTnNIP2;1 and VvTnNIP5;1 to As, B, and Se, implying importance of H5 sequence for substrate selection. These results contribute to the knowledge of the overall determinants of substrate selectivity in NIPsMDPIRepositório da Universidade de LisboaSabir, FarzanaDi Pizzio, AntonellaLoureiro-Dias, M. C.Casini, AngelaSoveral, GraçaPrista, Catarina2020-09-24T13:26:13Z20202020-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.5/20391engInt. J. Mol. Sci. 2020, 21, 669710.3390/ijms21186697info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-03-06T14:49:50Zoai:www.repository.utl.pt:10400.5/20391Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:05:09.160326Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Insights into the selectivity mechanisms of grapevine NIP aquaporins
title Insights into the selectivity mechanisms of grapevine NIP aquaporins
spellingShingle Insights into the selectivity mechanisms of grapevine NIP aquaporins
Sabir, Farzana
nodulin 26-like intrinsic proteins
grapevine
ar/R selectivity filter
site-directed mutagenesis
substrate selectivity
homology modeling
title_short Insights into the selectivity mechanisms of grapevine NIP aquaporins
title_full Insights into the selectivity mechanisms of grapevine NIP aquaporins
title_fullStr Insights into the selectivity mechanisms of grapevine NIP aquaporins
title_full_unstemmed Insights into the selectivity mechanisms of grapevine NIP aquaporins
title_sort Insights into the selectivity mechanisms of grapevine NIP aquaporins
author Sabir, Farzana
author_facet Sabir, Farzana
Di Pizzio, Antonella
Loureiro-Dias, M. C.
Casini, Angela
Soveral, Graça
Prista, Catarina
author_role author
author2 Di Pizzio, Antonella
Loureiro-Dias, M. C.
Casini, Angela
Soveral, Graça
Prista, Catarina
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Sabir, Farzana
Di Pizzio, Antonella
Loureiro-Dias, M. C.
Casini, Angela
Soveral, Graça
Prista, Catarina
dc.subject.por.fl_str_mv nodulin 26-like intrinsic proteins
grapevine
ar/R selectivity filter
site-directed mutagenesis
substrate selectivity
homology modeling
topic nodulin 26-like intrinsic proteins
grapevine
ar/R selectivity filter
site-directed mutagenesis
substrate selectivity
homology modeling
description Nodulin 26-like intrinsic proteins (NIPs) of the plant aquaporin family majorly facilitate the transport of physiologically relevant solutes. The present study intended to investigate how substrate selectivity in grapevine NIPs is influenced by the aromatic/arginine (ar/R) selectivity filter within the pore and the possible underlying mechanisms. A mutational approach was used to interchange the ar/R residues between grapevine NIPs (VvTnNIP1;1 withUniversidade de Lisboa, VvTnNIP6;1, and VvTnNIP2;1 with VvTnNIP5;1). Their functional characterization by stopped-flow spectroscopy in Saccharomyces cerevisiae revealed that mutations in residues of H2/H5 helices in VvTnNIP1;1 and VvTnNIP6;1 caused a general decline in membrane glycerol permeability but did not impart the expected substrate conductivity in the mutants. This result suggests that ar/R filter substitution could alter the NIP channel activity, but it was not su cient to interchange their substrate preferences. Further, homology modeling analyses evidenced that variations in the pore radius combined with the di erences in the channel’s physicochemical properties (hydrophilicity/hydrophobicity) may drive substrate selectivity. Furthermore, yeast growth assays showed that H5 residue substitution alleviated the sensitivity of VvTnNIP2;1 and VvTnNIP5;1 to As, B, and Se, implying importance of H5 sequence for substrate selection. These results contribute to the knowledge of the overall determinants of substrate selectivity in NIPs
publishDate 2020
dc.date.none.fl_str_mv 2020-09-24T13:26:13Z
2020
2020-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.5/20391
url http://hdl.handle.net/10400.5/20391
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Int. J. Mol. Sci. 2020, 21, 6697
10.3390/ijms21186697
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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