Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis

Detalhes bibliográficos
Autor(a) principal: Lepetit, D.
Data de Publicação: 2002
Outros Autores: Brehm, António, Fouillet, P., Biémont, C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.13/3049
Resumo: The insertion site numbers of the retrotransposable elements (TE) 412, gypsy and bilbo were determined in individuals of five distinct natural populations of the endemic species Drosophila madeirensis from the island of Madeira. The TE distributions were compared to those of the paleartic, widespread and phylogenetically closely related species, D. subobscura. In situ hybridization and Southern blots showed that in D. madeirensis the number of insertion sites ranged between 10 and 15, three and six, and 35 and 42 for elements 412, gypsy and bilbo, respectively. The corresponding values for D. subobscura were similar. Two of these elements, 412 and gypsy, had very few insertions in the heterochromatin, unlike bilbo, which displayed a high heterochromatic insertion number. The Southern band polymorphism was very high, leading to within-population variation of 97.2%, whatever the population and the TE concerned. Using the polymorphic TE insertion sites as markers to analyse population structure by AMOVA, adapted for RAPD (Randomly Amplified Polymorphic DNA) data, we found small but significant genetic differences between the populations on Madeira. This slight differentiation, coupled with similar copy numbers for each TE between populations, suggests that the D. madeirensis species consists of a single, only slightly subdivided population. These data also show that insular populations and endemic species of Drosophila can have as many copies of TEs as more widespread species.
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spelling Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis412BilboGypsyDrosophila madeirensisPopulation structuringTransposable elementsThe insertion site numbers of the retrotransposable elements (TE) 412, gypsy and bilbo were determined in individuals of five distinct natural populations of the endemic species Drosophila madeirensis from the island of Madeira. The TE distributions were compared to those of the paleartic, widespread and phylogenetically closely related species, D. subobscura. In situ hybridization and Southern blots showed that in D. madeirensis the number of insertion sites ranged between 10 and 15, three and six, and 35 and 42 for elements 412, gypsy and bilbo, respectively. The corresponding values for D. subobscura were similar. Two of these elements, 412 and gypsy, had very few insertions in the heterochromatin, unlike bilbo, which displayed a high heterochromatic insertion number. The Southern band polymorphism was very high, leading to within-population variation of 97.2%, whatever the population and the TE concerned. Using the polymorphic TE insertion sites as markers to analyse population structure by AMOVA, adapted for RAPD (Randomly Amplified Polymorphic DNA) data, we found small but significant genetic differences between the populations on Madeira. This slight differentiation, coupled with similar copy numbers for each TE between populations, suggests that the D. madeirensis species consists of a single, only slightly subdivided population. These data also show that insular populations and endemic species of Drosophila can have as many copies of TEs as more widespread species.WileyDigitUMaLepetit, D.Brehm, AntónioFouillet, P.Biémont, C.2020-12-29T13:38:51Z2002-03-01T00:00:00Z2002-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.13/3049engLepetit, D., Brehm, A., Fouillet, P., & Biémont, C. (2002). Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis. Molecular Ecology, 11(3), 347-354.10.1046/j.1365-294x.2002.01470.xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-09-05T12:55:56Zoai:digituma.uma.pt:10400.13/3049Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:05:53.877387Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
title Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
spellingShingle Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
Lepetit, D.
412
Bilbo
Gypsy
Drosophila madeirensis
Population structuring
Transposable elements
title_short Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
title_full Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
title_fullStr Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
title_full_unstemmed Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
title_sort Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis
author Lepetit, D.
author_facet Lepetit, D.
Brehm, António
Fouillet, P.
Biémont, C.
author_role author
author2 Brehm, António
Fouillet, P.
Biémont, C.
author2_role author
author
author
dc.contributor.none.fl_str_mv DigitUMa
dc.contributor.author.fl_str_mv Lepetit, D.
Brehm, António
Fouillet, P.
Biémont, C.
dc.subject.por.fl_str_mv 412
Bilbo
Gypsy
Drosophila madeirensis
Population structuring
Transposable elements
topic 412
Bilbo
Gypsy
Drosophila madeirensis
Population structuring
Transposable elements
description The insertion site numbers of the retrotransposable elements (TE) 412, gypsy and bilbo were determined in individuals of five distinct natural populations of the endemic species Drosophila madeirensis from the island of Madeira. The TE distributions were compared to those of the paleartic, widespread and phylogenetically closely related species, D. subobscura. In situ hybridization and Southern blots showed that in D. madeirensis the number of insertion sites ranged between 10 and 15, three and six, and 35 and 42 for elements 412, gypsy and bilbo, respectively. The corresponding values for D. subobscura were similar. Two of these elements, 412 and gypsy, had very few insertions in the heterochromatin, unlike bilbo, which displayed a high heterochromatic insertion number. The Southern band polymorphism was very high, leading to within-population variation of 97.2%, whatever the population and the TE concerned. Using the polymorphic TE insertion sites as markers to analyse population structure by AMOVA, adapted for RAPD (Randomly Amplified Polymorphic DNA) data, we found small but significant genetic differences between the populations on Madeira. This slight differentiation, coupled with similar copy numbers for each TE between populations, suggests that the D. madeirensis species consists of a single, only slightly subdivided population. These data also show that insular populations and endemic species of Drosophila can have as many copies of TEs as more widespread species.
publishDate 2002
dc.date.none.fl_str_mv 2002-03-01T00:00:00Z
2002-03-01T00:00:00Z
2020-12-29T13:38:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.13/3049
url http://hdl.handle.net/10400.13/3049
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Lepetit, D., Brehm, A., Fouillet, P., & Biémont, C. (2002). Insertion polymorphism of retrotransposable elements in populations of the insular, endemic species Drosophila madeirensis. Molecular Ecology, 11(3), 347-354.
10.1046/j.1365-294x.2002.01470.x
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
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