A simulation-based method to compare the pest suppression potential of predators: A case study with spiders

Detalhes bibliográficos
Autor(a) principal: Benhadi-Marín, Jacinto
Data de Publicação: 2018
Outros Autores: Pereira, J.A., Barreales, David, Sousa, José Paulo, Santos, Sónia A.P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10198/16919
Resumo: Assessing and comparing the pest killing capacity of predators is a crucial but laborious task during the implementation of sustainable farming systems. Critical attributes of assessment include quantifying predator’s attack rate (a) and handling time (Th). The maximum attack rate (T/Th) (i.e. the maximum number of prey that can be attacked by a predator during the time interval (T) considered) could be a more precise and interpretable indicator of the potential suppression of pests exerted by a predator; however, its calculation only provides a point estimator usually derived from incomplete datasets (e.g. unbalanced or low replicated experimental designs) that could lead to draw wrong conclusions. We introduce simaR (simulation of maximum attack rates using R), an R library that generates 95% confidence intervals around estimates of the maximum attack rate that can be easily and intuitively used to compare across species. We validated the simulation method and used the empirical results of a controlled laboratory experiment to compare the maximum attack rates of spiders across a range of Medfly prey densities and illustrate how to use simaR with non-replicated partial data. Applying our method we found a significant effect of temperature on the maximum attack rate of two different guilds of spiders, the orb-weaver A. cucurbitina and the ambusher S. globosum that was not relevant regarding their attack rate and handling time. Our method compares different predator species and/or experimental conditions in a simple and reproducible procedure through an accurate, easy-to-use, fast and statistically robust analysis, based on simulation and bootstrapping, that can be used to assess the pest suppression potential of predators by simulating their functional responses from low-effort laboratory trials.
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spelling A simulation-based method to compare the pest suppression potential of predators: A case study with spidersBiological controlCeratitis capitataFunctional responsePreyR librarySpidersAssessing and comparing the pest killing capacity of predators is a crucial but laborious task during the implementation of sustainable farming systems. Critical attributes of assessment include quantifying predator’s attack rate (a) and handling time (Th). The maximum attack rate (T/Th) (i.e. the maximum number of prey that can be attacked by a predator during the time interval (T) considered) could be a more precise and interpretable indicator of the potential suppression of pests exerted by a predator; however, its calculation only provides a point estimator usually derived from incomplete datasets (e.g. unbalanced or low replicated experimental designs) that could lead to draw wrong conclusions. We introduce simaR (simulation of maximum attack rates using R), an R library that generates 95% confidence intervals around estimates of the maximum attack rate that can be easily and intuitively used to compare across species. We validated the simulation method and used the empirical results of a controlled laboratory experiment to compare the maximum attack rates of spiders across a range of Medfly prey densities and illustrate how to use simaR with non-replicated partial data. Applying our method we found a significant effect of temperature on the maximum attack rate of two different guilds of spiders, the orb-weaver A. cucurbitina and the ambusher S. globosum that was not relevant regarding their attack rate and handling time. Our method compares different predator species and/or experimental conditions in a simple and reproducible procedure through an accurate, easy-to-use, fast and statistically robust analysis, based on simulation and bootstrapping, that can be used to assess the pest suppression potential of predators by simulating their functional responses from low-effort laboratory trials.The authors are grateful to the Portuguese Foundation for Science and Technology for financial support through the project EXCL/AGRPRO/ 0591/2012 “Olive crop protection in sustainable production under global climatic changes: linking ecological infrastructures to ecosystem functions”. Jacinto Benhadi-Marín thanks FCT for the Ph.D. grant SFRH/BD/97248/2013. This manuscript is part of Jacinto Benhadi-Marín’s Ph.D. thesis. The authors would like to thank the editor and reviewers for their valuable comments and have no conflicts of interest to declare.Biblioteca Digital do IPBBenhadi-Marín, JacintoPereira, J.A.Barreales, DavidSousa, José PauloSantos, Sónia A.P.2018-01-19T10:00:00Z20182018-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10198/16919engBenhadi-Marín, Jacinto; Pereira, José Alberto; Barreales, David; Sousa, José Paulo; Santos, Sónia A.P. (2018). A simulation-based method to compare the pest suppression potential of predators: A case study with spiders. Biological Control. ISSN 1049-9644. 123, p. 87-961049-964410.1016/j.biocontrol.2018.05.007info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-21T10:41:00Zoai:bibliotecadigital.ipb.pt:10198/16919Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T23:07:48.037892Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
title A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
spellingShingle A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
Benhadi-Marín, Jacinto
Biological control
Ceratitis capitata
Functional response
Prey
R library
Spiders
title_short A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
title_full A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
title_fullStr A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
title_full_unstemmed A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
title_sort A simulation-based method to compare the pest suppression potential of predators: A case study with spiders
author Benhadi-Marín, Jacinto
author_facet Benhadi-Marín, Jacinto
Pereira, J.A.
Barreales, David
Sousa, José Paulo
Santos, Sónia A.P.
author_role author
author2 Pereira, J.A.
Barreales, David
Sousa, José Paulo
Santos, Sónia A.P.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Biblioteca Digital do IPB
dc.contributor.author.fl_str_mv Benhadi-Marín, Jacinto
Pereira, J.A.
Barreales, David
Sousa, José Paulo
Santos, Sónia A.P.
dc.subject.por.fl_str_mv Biological control
Ceratitis capitata
Functional response
Prey
R library
Spiders
topic Biological control
Ceratitis capitata
Functional response
Prey
R library
Spiders
description Assessing and comparing the pest killing capacity of predators is a crucial but laborious task during the implementation of sustainable farming systems. Critical attributes of assessment include quantifying predator’s attack rate (a) and handling time (Th). The maximum attack rate (T/Th) (i.e. the maximum number of prey that can be attacked by a predator during the time interval (T) considered) could be a more precise and interpretable indicator of the potential suppression of pests exerted by a predator; however, its calculation only provides a point estimator usually derived from incomplete datasets (e.g. unbalanced or low replicated experimental designs) that could lead to draw wrong conclusions. We introduce simaR (simulation of maximum attack rates using R), an R library that generates 95% confidence intervals around estimates of the maximum attack rate that can be easily and intuitively used to compare across species. We validated the simulation method and used the empirical results of a controlled laboratory experiment to compare the maximum attack rates of spiders across a range of Medfly prey densities and illustrate how to use simaR with non-replicated partial data. Applying our method we found a significant effect of temperature on the maximum attack rate of two different guilds of spiders, the orb-weaver A. cucurbitina and the ambusher S. globosum that was not relevant regarding their attack rate and handling time. Our method compares different predator species and/or experimental conditions in a simple and reproducible procedure through an accurate, easy-to-use, fast and statistically robust analysis, based on simulation and bootstrapping, that can be used to assess the pest suppression potential of predators by simulating their functional responses from low-effort laboratory trials.
publishDate 2018
dc.date.none.fl_str_mv 2018-01-19T10:00:00Z
2018
2018-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10198/16919
url http://hdl.handle.net/10198/16919
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Benhadi-Marín, Jacinto; Pereira, José Alberto; Barreales, David; Sousa, José Paulo; Santos, Sónia A.P. (2018). A simulation-based method to compare the pest suppression potential of predators: A case study with spiders. Biological Control. ISSN 1049-9644. 123, p. 87-96
1049-9644
10.1016/j.biocontrol.2018.05.007
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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