A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts

Detalhes bibliográficos
Autor(a) principal: Figueiredo, IN
Data de Publicação: 2010
Outros Autores: Leal, C, Leonori, T, Romanazzi, G, Figueiredo, P, Donato, MM
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.4/792
Resumo: Colorectal cancer is initiated in colonic crypts as a consequence of alterations leading to the disruption of the normal colonic cellular process. We propose a model, which couples a convection-diffusion type equation with a level set equation, for tracking the time evolution of an epithelial cell set, inside a colonic crypt, until it reaches the top of the crypt. The convection-diffusion equation describes the evolution of the density of the cells in the epithelial cell set. The parameters of this equation regulate the geometric and temporal cellular mechanism, and different parameter choices lead to distinct cell behavior. The level set equation tracks the location and shape of the epithelial cell set, inside the crypt, as well as its interface, separating the cell set from the others cells, which reside within the crypt. The interfacial velocity of the epithelial cell set is obtained from the convection-diffusion type equation. Some in silico experiments are described. They are performed in a relative small time, with respect to the real biological evolution.
id RCAP_1cf876cb3fe3d6c44b27e0cd98680fcf
oai_identifier_str oai:rihuc.huc.min-saude.pt:10400.4/792
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling A coupled convection-diffusion level set model for tracking epithelial cells in colonic cryptsNeoplasias do CólonColorectal cancer is initiated in colonic crypts as a consequence of alterations leading to the disruption of the normal colonic cellular process. We propose a model, which couples a convection-diffusion type equation with a level set equation, for tracking the time evolution of an epithelial cell set, inside a colonic crypt, until it reaches the top of the crypt. The convection-diffusion equation describes the evolution of the density of the cells in the epithelial cell set. The parameters of this equation regulate the geometric and temporal cellular mechanism, and different parameter choices lead to distinct cell behavior. The level set equation tracks the location and shape of the epithelial cell set, inside the crypt, as well as its interface, separating the cell set from the others cells, which reside within the crypt. The interfacial velocity of the epithelial cell set is obtained from the convection-diffusion type equation. Some in silico experiments are described. They are performed in a relative small time, with respect to the real biological evolution.ElsevierRIHUCFigueiredo, INLeal, CLeonori, TRomanazzi, GFigueiredo, PDonato, MM2010-06-24T11:47:54Z20102010-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.4/792engProcedia Comput Sci. 2010; 1(1):955-63info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-11T14:21:59Zoai:rihuc.huc.min-saude.pt:10400.4/792Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:03:20.601537Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
title A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
spellingShingle A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
Figueiredo, IN
Neoplasias do Cólon
title_short A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
title_full A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
title_fullStr A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
title_full_unstemmed A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
title_sort A coupled convection-diffusion level set model for tracking epithelial cells in colonic crypts
author Figueiredo, IN
author_facet Figueiredo, IN
Leal, C
Leonori, T
Romanazzi, G
Figueiredo, P
Donato, MM
author_role author
author2 Leal, C
Leonori, T
Romanazzi, G
Figueiredo, P
Donato, MM
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv RIHUC
dc.contributor.author.fl_str_mv Figueiredo, IN
Leal, C
Leonori, T
Romanazzi, G
Figueiredo, P
Donato, MM
dc.subject.por.fl_str_mv Neoplasias do Cólon
topic Neoplasias do Cólon
description Colorectal cancer is initiated in colonic crypts as a consequence of alterations leading to the disruption of the normal colonic cellular process. We propose a model, which couples a convection-diffusion type equation with a level set equation, for tracking the time evolution of an epithelial cell set, inside a colonic crypt, until it reaches the top of the crypt. The convection-diffusion equation describes the evolution of the density of the cells in the epithelial cell set. The parameters of this equation regulate the geometric and temporal cellular mechanism, and different parameter choices lead to distinct cell behavior. The level set equation tracks the location and shape of the epithelial cell set, inside the crypt, as well as its interface, separating the cell set from the others cells, which reside within the crypt. The interfacial velocity of the epithelial cell set is obtained from the convection-diffusion type equation. Some in silico experiments are described. They are performed in a relative small time, with respect to the real biological evolution.
publishDate 2010
dc.date.none.fl_str_mv 2010-06-24T11:47:54Z
2010
2010-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.4/792
url http://hdl.handle.net/10400.4/792
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Procedia Comput Sci. 2010; 1(1):955-63
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799131697572216832