Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species

Detalhes bibliográficos
Autor(a) principal: Marques, Isabel
Data de Publicação: 2023
Outros Autores: Fernandes, Isabel, Paulo, Octávio S., Batista, Dora, Lidon, Fernando C., Partelli, Fábio, DaMatta, Fábio M., Ribeiro-Barros, Ana I., Ramalho, José C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.5/30272
Resumo: Drought is a major constraint to plant growth and productivity worldwide and will aggravate as water availability becomes scarcer. Although elevated air [CO2] might mitigate some of these effects in plants, the mechanisms underlying the involved responses are poorly understood in woody economically important crops such as Coffea. This study analyzed transcriptome changes in Coffea canephora cv. CL153 and C. arabica cv. Icatu exposed to moderate (MWD) or severe water deficits (SWD) and grown under ambient (aCO2) or elevated (eCO2) air [CO2]. We found that changes in expression levels and regulatory pathways were barely affected by MWD, while the SWD condition led to a down-regulation of most differentially expressed genes (DEGs). eCO2 attenuated the impacts of drought in the transcripts of both genotypes but mostly in Icatu, in agreement with physiological and metabolic studies. A predominance of protective and reactive oxygen species (ROS)-scavenging-related genes, directly or indirectly associated with ABA signaling pathways, was found in Coffea responses, including genes involved in water deprivation and desiccation, such as protein phosphatases in Icatu, and aspartic proteases and dehydrins in CL153, whose expression was validated by qRT-PCR. The existence of a complex post-transcriptional regulatory mechanism appears to occur in Coffea explaining some apparent discrepancies between transcriptomic, proteomic, and physiological data in these genotypes.
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spelling Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea speciesABA signalingcoffeefunctional analysisROSstresstoleranceDrought is a major constraint to plant growth and productivity worldwide and will aggravate as water availability becomes scarcer. Although elevated air [CO2] might mitigate some of these effects in plants, the mechanisms underlying the involved responses are poorly understood in woody economically important crops such as Coffea. This study analyzed transcriptome changes in Coffea canephora cv. CL153 and C. arabica cv. Icatu exposed to moderate (MWD) or severe water deficits (SWD) and grown under ambient (aCO2) or elevated (eCO2) air [CO2]. We found that changes in expression levels and regulatory pathways were barely affected by MWD, while the SWD condition led to a down-regulation of most differentially expressed genes (DEGs). eCO2 attenuated the impacts of drought in the transcripts of both genotypes but mostly in Icatu, in agreement with physiological and metabolic studies. A predominance of protective and reactive oxygen species (ROS)-scavenging-related genes, directly or indirectly associated with ABA signaling pathways, was found in Coffea responses, including genes involved in water deprivation and desiccation, such as protein phosphatases in Icatu, and aspartic proteases and dehydrins in CL153, whose expression was validated by qRT-PCR. The existence of a complex post-transcriptional regulatory mechanism appears to occur in Coffea explaining some apparent discrepancies between transcriptomic, proteomic, and physiological data in these genotypes.MDPIRepositório da Universidade de LisboaMarques, IsabelFernandes, IsabelPaulo, Octávio S.Batista, DoraLidon, Fernando C.Partelli, FábioDaMatta, Fábio M.Ribeiro-Barros, Ana I.Ramalho, José C.2024-03-04T17:29:01Z2023-022023-02-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.5/30272engMarques, I.; Fernandes, I.; Paulo, O.S.; Batista, D.; Lidon, F.C.; Partelli, F.; DaMatta, F.M.; Ribeiro-Barros, A.I.; Ramalho, J.C. Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species. Int. J. Mol. Sci. 2023, 24, 3210.10.3390/ijms24043210info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-10T01:34:26Zoai:www.repository.utl.pt:10400.5/30272Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:14:15.468833Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
title Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
spellingShingle Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
Marques, Isabel
ABA signaling
coffee
functional analysis
ROS
stress
tolerance
title_short Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
title_full Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
title_fullStr Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
title_full_unstemmed Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
title_sort Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species
author Marques, Isabel
author_facet Marques, Isabel
Fernandes, Isabel
Paulo, Octávio S.
Batista, Dora
Lidon, Fernando C.
Partelli, Fábio
DaMatta, Fábio M.
Ribeiro-Barros, Ana I.
Ramalho, José C.
author_role author
author2 Fernandes, Isabel
Paulo, Octávio S.
Batista, Dora
Lidon, Fernando C.
Partelli, Fábio
DaMatta, Fábio M.
Ribeiro-Barros, Ana I.
Ramalho, José C.
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Marques, Isabel
Fernandes, Isabel
Paulo, Octávio S.
Batista, Dora
Lidon, Fernando C.
Partelli, Fábio
DaMatta, Fábio M.
Ribeiro-Barros, Ana I.
Ramalho, José C.
dc.subject.por.fl_str_mv ABA signaling
coffee
functional analysis
ROS
stress
tolerance
topic ABA signaling
coffee
functional analysis
ROS
stress
tolerance
description Drought is a major constraint to plant growth and productivity worldwide and will aggravate as water availability becomes scarcer. Although elevated air [CO2] might mitigate some of these effects in plants, the mechanisms underlying the involved responses are poorly understood in woody economically important crops such as Coffea. This study analyzed transcriptome changes in Coffea canephora cv. CL153 and C. arabica cv. Icatu exposed to moderate (MWD) or severe water deficits (SWD) and grown under ambient (aCO2) or elevated (eCO2) air [CO2]. We found that changes in expression levels and regulatory pathways were barely affected by MWD, while the SWD condition led to a down-regulation of most differentially expressed genes (DEGs). eCO2 attenuated the impacts of drought in the transcripts of both genotypes but mostly in Icatu, in agreement with physiological and metabolic studies. A predominance of protective and reactive oxygen species (ROS)-scavenging-related genes, directly or indirectly associated with ABA signaling pathways, was found in Coffea responses, including genes involved in water deprivation and desiccation, such as protein phosphatases in Icatu, and aspartic proteases and dehydrins in CL153, whose expression was validated by qRT-PCR. The existence of a complex post-transcriptional regulatory mechanism appears to occur in Coffea explaining some apparent discrepancies between transcriptomic, proteomic, and physiological data in these genotypes.
publishDate 2023
dc.date.none.fl_str_mv 2023-02
2023-02-01T00:00:00Z
2024-03-04T17:29:01Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.5/30272
url http://hdl.handle.net/10400.5/30272
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Marques, I.; Fernandes, I.; Paulo, O.S.; Batista, D.; Lidon, F.C.; Partelli, F.; DaMatta, F.M.; Ribeiro-Barros, A.I.; Ramalho, J.C. Overexpression of water-responsive genes promoted by elevated CO2 reduces ROS and enhances drought tolerance in coffea species. Int. J. Mol. Sci. 2023, 24, 3210.
10.3390/ijms24043210
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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