Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal

Detalhes bibliográficos
Autor(a) principal: Ragonezi, Carla
Data de Publicação: 2022
Outros Autores: Nóbrega, Humberto, Leite, Maria Inês, Freitas, José G. R. de, Macedo, Fabrício Lopes, Carvalho, Miguel Â. A. Pinheiro de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.13/5458
Resumo: Beta patula Aiton is a crop wild relative (CWR) which belongs to the Gene Pool 1b and is considered a Critically Endangered species, and is present in very specific environments, such as the Desembarcadouro islet (DI) in Ponta de São Lourenço or Chão islet (CI) in the Desertas Islands. The ISOPlexis Center (University of Madeira) has been providing continuous support for its in situ conservation by keeping a management plan of wild populations and an ex situ conservation strategy through the storage of accessions in the ISOPlexis GeneBank. The present work intends to present the spatial distribution of genetic variability and diversity in these B. patula populations using eight polymorphic Simple Sequence Repeat (SSR) markers. The overall results lead to the identification of three spots with a high genetic diversity. CI with a small cluster of individuals shows a genetic footprint different from DI, having unique alleles present in its population. DI has two distinct areas: the western area, with a higher individual density but with a lower genetic diversity and higher allele fixation; and the central area, with a lower individual count but with a higher genetic diversity and with the presence of unique alleles. Despite some genetic differences, the comparison of the two islets’ DI and CI populations shows that they have more similarities than differences. Analysis of the Molecular Variance, based on the hierarchical cluster, showed a 9% diversity between populations, 68% among individuals, and 23% within individuals. This data will be used for the establishment of a protocol to monitor and manage B. patula genetic diversity under a genetic reserve, subsequently contributing to the European Genetic Reserve network implementation and the protection of this important CWR.
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spelling Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, PortugalEndemismCrop wild relativeCWRSSRGenetic reserveIn situ conservation.Escola Superior de Tecnologias e GestãoFaculdade de Ciências da VidaBeta patula Aiton is a crop wild relative (CWR) which belongs to the Gene Pool 1b and is considered a Critically Endangered species, and is present in very specific environments, such as the Desembarcadouro islet (DI) in Ponta de São Lourenço or Chão islet (CI) in the Desertas Islands. The ISOPlexis Center (University of Madeira) has been providing continuous support for its in situ conservation by keeping a management plan of wild populations and an ex situ conservation strategy through the storage of accessions in the ISOPlexis GeneBank. The present work intends to present the spatial distribution of genetic variability and diversity in these B. patula populations using eight polymorphic Simple Sequence Repeat (SSR) markers. The overall results lead to the identification of three spots with a high genetic diversity. CI with a small cluster of individuals shows a genetic footprint different from DI, having unique alleles present in its population. DI has two distinct areas: the western area, with a higher individual density but with a lower genetic diversity and higher allele fixation; and the central area, with a lower individual count but with a higher genetic diversity and with the presence of unique alleles. Despite some genetic differences, the comparison of the two islets’ DI and CI populations shows that they have more similarities than differences. Analysis of the Molecular Variance, based on the hierarchical cluster, showed a 9% diversity between populations, 68% among individuals, and 23% within individuals. This data will be used for the establishment of a protocol to monitor and manage B. patula genetic diversity under a genetic reserve, subsequently contributing to the European Genetic Reserve network implementation and the protection of this important CWR.MDPIDigitUMaRagonezi, CarlaNóbrega, HumbertoLeite, Maria InêsFreitas, José G. R. deMacedo, Fabrício LopesCarvalho, Miguel Â. A. Pinheiro de2024-01-04T15:53:15Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.13/5458engRagonezi, C.; Nóbrega, H.; Leite, M.I.; Freitas, J.G.R.d.; Macedo, F.L.; Carvalho, M.Â.A.P.d. Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal. Agriculture 2023, 13, 27. https://doi.org/10.3390/ agriculture1301002710.3390/agriculture13010027info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-07T03:30:29Zoai:digituma.uma.pt:10400.13/5458Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:30:42.632632Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
title Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
spellingShingle Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
Ragonezi, Carla
Endemism
Crop wild relative
CWR
SSR
Genetic reserve
In situ conservation
.
Escola Superior de Tecnologias e Gestão
Faculdade de Ciências da Vida
title_short Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
title_full Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
title_fullStr Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
title_full_unstemmed Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
title_sort Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal
author Ragonezi, Carla
author_facet Ragonezi, Carla
Nóbrega, Humberto
Leite, Maria Inês
Freitas, José G. R. de
Macedo, Fabrício Lopes
Carvalho, Miguel Â. A. Pinheiro de
author_role author
author2 Nóbrega, Humberto
Leite, Maria Inês
Freitas, José G. R. de
Macedo, Fabrício Lopes
Carvalho, Miguel Â. A. Pinheiro de
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv DigitUMa
dc.contributor.author.fl_str_mv Ragonezi, Carla
Nóbrega, Humberto
Leite, Maria Inês
Freitas, José G. R. de
Macedo, Fabrício Lopes
Carvalho, Miguel Â. A. Pinheiro de
dc.subject.por.fl_str_mv Endemism
Crop wild relative
CWR
SSR
Genetic reserve
In situ conservation
.
Escola Superior de Tecnologias e Gestão
Faculdade de Ciências da Vida
topic Endemism
Crop wild relative
CWR
SSR
Genetic reserve
In situ conservation
.
Escola Superior de Tecnologias e Gestão
Faculdade de Ciências da Vida
description Beta patula Aiton is a crop wild relative (CWR) which belongs to the Gene Pool 1b and is considered a Critically Endangered species, and is present in very specific environments, such as the Desembarcadouro islet (DI) in Ponta de São Lourenço or Chão islet (CI) in the Desertas Islands. The ISOPlexis Center (University of Madeira) has been providing continuous support for its in situ conservation by keeping a management plan of wild populations and an ex situ conservation strategy through the storage of accessions in the ISOPlexis GeneBank. The present work intends to present the spatial distribution of genetic variability and diversity in these B. patula populations using eight polymorphic Simple Sequence Repeat (SSR) markers. The overall results lead to the identification of three spots with a high genetic diversity. CI with a small cluster of individuals shows a genetic footprint different from DI, having unique alleles present in its population. DI has two distinct areas: the western area, with a higher individual density but with a lower genetic diversity and higher allele fixation; and the central area, with a lower individual count but with a higher genetic diversity and with the presence of unique alleles. Despite some genetic differences, the comparison of the two islets’ DI and CI populations shows that they have more similarities than differences. Analysis of the Molecular Variance, based on the hierarchical cluster, showed a 9% diversity between populations, 68% among individuals, and 23% within individuals. This data will be used for the establishment of a protocol to monitor and manage B. patula genetic diversity under a genetic reserve, subsequently contributing to the European Genetic Reserve network implementation and the protection of this important CWR.
publishDate 2022
dc.date.none.fl_str_mv 2022
2022-01-01T00:00:00Z
2024-01-04T15:53:15Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.13/5458
url http://hdl.handle.net/10400.13/5458
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Ragonezi, C.; Nóbrega, H.; Leite, M.I.; Freitas, J.G.R.d.; Macedo, F.L.; Carvalho, M.Â.A.P.d. Distribution of Genetic Diversity in Beta patula Aiton Populations from Madeira Archipelago, Portugal. Agriculture 2023, 13, 27. https://doi.org/10.3390/ agriculture13010027
10.3390/agriculture13010027
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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