Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules

Detalhes bibliográficos
Autor(a) principal: Mikutis, Sigitas
Data de Publicação: 2023
Outros Autores: Rebelo, Maria, Yankova, Eliza, Gu, Muxin, Tang, Cong, Coelho, Ana R., Yang, Mo, Hazemi, Madoka E., Pires de Miranda, Marta, Eleftheriou, Maria, Robertson, Max, Vassiliou, George S., Adams, David J., Simas, J. Pedro, Corzana, Francisco, Schneekloth, John S., Tzelepis, Konstantinos, Bernardes, Gonçalo J.L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.14/41145
Resumo: Nature has evolved intricate machinery to target and degrade RNA, and some of these molecular mechanisms can be adapted for therapeutic use. Small interfering RNAs and RNase H-inducing oligonucleotides have yielded therapeutic agents against diseases that cannot be tackled using protein-centered approaches. Because these therapeutic agents are nucleic acid-based, they have several inherent drawbacks which include poor cellular uptake and stability. Here we report a new approach to target and degrade RNA using small molecules, proximity-induced nucleic acid degrader (PINAD). We have utilized this strategy to design two families of RNA degraders which target two different RNA structures within the genome of SARS-CoV-2: G-quadruplexes and the betacoronaviral pseudoknot. We demonstrate that these novel molecules degrade their targets using in vitro, in cellulo, and in vivo SARS-CoV-2 infection models. Our strategy allows any RNA binding small molecule to be converted into a degrader, empowering RNA binders that are not potent enough to exert a phenotypic effect on their own. PINAD raises the possibility of targeting and destroying any disease-related RNA species, which can greatly expand the space of druggable targets and diseases.
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spelling Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small moleculesNature has evolved intricate machinery to target and degrade RNA, and some of these molecular mechanisms can be adapted for therapeutic use. Small interfering RNAs and RNase H-inducing oligonucleotides have yielded therapeutic agents against diseases that cannot be tackled using protein-centered approaches. Because these therapeutic agents are nucleic acid-based, they have several inherent drawbacks which include poor cellular uptake and stability. Here we report a new approach to target and degrade RNA using small molecules, proximity-induced nucleic acid degrader (PINAD). We have utilized this strategy to design two families of RNA degraders which target two different RNA structures within the genome of SARS-CoV-2: G-quadruplexes and the betacoronaviral pseudoknot. We demonstrate that these novel molecules degrade their targets using in vitro, in cellulo, and in vivo SARS-CoV-2 infection models. Our strategy allows any RNA binding small molecule to be converted into a degrader, empowering RNA binders that are not potent enough to exert a phenotypic effect on their own. PINAD raises the possibility of targeting and destroying any disease-related RNA species, which can greatly expand the space of druggable targets and diseases.Veritati - Repositório Institucional da Universidade Católica PortuguesaMikutis, SigitasRebelo, MariaYankova, ElizaGu, MuxinTang, CongCoelho, Ana R.Yang, MoHazemi, Madoka E.Pires de Miranda, MartaEleftheriou, MariaRobertson, MaxVassiliou, George S.Adams, David J.Simas, J. PedroCorzana, FranciscoSchneekloth, John S.Tzelepis, KonstantinosBernardes, Gonçalo J.L.2023-05-17T08:17:27Z2023-05-242023-05-24T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.14/41145eng2374-794310.1021/acscentsci.3c0001585156240026info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-25T01:39:11Zoai:repositorio.ucp.pt:10400.14/41145Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:33:49.133118Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
title Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
spellingShingle Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
Mikutis, Sigitas
title_short Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
title_full Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
title_fullStr Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
title_full_unstemmed Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
title_sort Proximity-Induced Nucleic Acid Degrader (PINAD) approach to targeted RNA degradation using small molecules
author Mikutis, Sigitas
author_facet Mikutis, Sigitas
Rebelo, Maria
Yankova, Eliza
Gu, Muxin
Tang, Cong
Coelho, Ana R.
Yang, Mo
Hazemi, Madoka E.
Pires de Miranda, Marta
Eleftheriou, Maria
Robertson, Max
Vassiliou, George S.
Adams, David J.
Simas, J. Pedro
Corzana, Francisco
Schneekloth, John S.
Tzelepis, Konstantinos
Bernardes, Gonçalo J.L.
author_role author
author2 Rebelo, Maria
Yankova, Eliza
Gu, Muxin
Tang, Cong
Coelho, Ana R.
Yang, Mo
Hazemi, Madoka E.
Pires de Miranda, Marta
Eleftheriou, Maria
Robertson, Max
Vassiliou, George S.
Adams, David J.
Simas, J. Pedro
Corzana, Francisco
Schneekloth, John S.
Tzelepis, Konstantinos
Bernardes, Gonçalo J.L.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Veritati - Repositório Institucional da Universidade Católica Portuguesa
dc.contributor.author.fl_str_mv Mikutis, Sigitas
Rebelo, Maria
Yankova, Eliza
Gu, Muxin
Tang, Cong
Coelho, Ana R.
Yang, Mo
Hazemi, Madoka E.
Pires de Miranda, Marta
Eleftheriou, Maria
Robertson, Max
Vassiliou, George S.
Adams, David J.
Simas, J. Pedro
Corzana, Francisco
Schneekloth, John S.
Tzelepis, Konstantinos
Bernardes, Gonçalo J.L.
description Nature has evolved intricate machinery to target and degrade RNA, and some of these molecular mechanisms can be adapted for therapeutic use. Small interfering RNAs and RNase H-inducing oligonucleotides have yielded therapeutic agents against diseases that cannot be tackled using protein-centered approaches. Because these therapeutic agents are nucleic acid-based, they have several inherent drawbacks which include poor cellular uptake and stability. Here we report a new approach to target and degrade RNA using small molecules, proximity-induced nucleic acid degrader (PINAD). We have utilized this strategy to design two families of RNA degraders which target two different RNA structures within the genome of SARS-CoV-2: G-quadruplexes and the betacoronaviral pseudoknot. We demonstrate that these novel molecules degrade their targets using in vitro, in cellulo, and in vivo SARS-CoV-2 infection models. Our strategy allows any RNA binding small molecule to be converted into a degrader, empowering RNA binders that are not potent enough to exert a phenotypic effect on their own. PINAD raises the possibility of targeting and destroying any disease-related RNA species, which can greatly expand the space of druggable targets and diseases.
publishDate 2023
dc.date.none.fl_str_mv 2023-05-17T08:17:27Z
2023-05-24
2023-05-24T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.14/41145
url http://hdl.handle.net/10400.14/41145
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2374-7943
10.1021/acscentsci.3c00015
85156240026
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dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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