Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Detalhes bibliográficos
Autor(a) principal: Butler, Geraldine
Data de Publicação: 2009
Outros Autores: Rasmussen, Matthew D., Lin, Michael F., Santos, Manuel A. S., Sakthikumar, Sharadha, Munro, Carol A., Rheinbay, Esther, Grabherr, Manfred, Forche, Anja, Reedy, Jennifer L., Agrafioti, Ino, Arnaud, Martha B., Bates, Steven, Brown, Alistair J. P., Brunke, Sascha, Costanzo, Maria C., Fitzpatrick, David A., Groot, Piet W. J. de, Harris, David, Hoyer, Lois L., Hube, Bernhard, Klis, Frans M., Kodira, Chinnappa, Lennard, Nicola, Logue, Mary E., Martin, Ronny, Neiman, Aaron M., Nikolaou, Elissavet, Quail, Michael A., Quinn, Janet, Santos, Maria C., Schmitzberger, Florian F., Sherlock, Gavin, Shah, Prachi, Silverstein, Kevin A. T., Skrzypek, Marek S., Soll, David, Staggs, Rodney, Stansfield, Ian, Stumpf, Michael P. H., Sudbery, Peter E., Srikantha, Thyagarajan, Zeng, Qiandong, Berman, Judith, Berriman, Matthew, Heitman, Joseph, Gow, Neil A. R., Lorenz, Michael C, Birren, Bruce W., Kellis, Manolis, Cuomo, Christina A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10773/27729
Resumo: Candida species are the most common cause of opportunistic fungal infection worldwide. Here we report the genome sequences of six Candida species and compare these and related pathogens and non-pathogens. There are significant expansions of cell wall, secreted and transporter gene families in pathogenic species, suggesting adaptations associated with virulence. Large genomic tracts are homozygous in three diploid species, possibly resulting from recent recombination events. Surprisingly, key components of the mating and meiosis pathways are missing from several species. These include major differences at the mating-type loci (MTL); Lodderomyces elongisporus lacks MTL, and components of the a1/2 cell identity determinant were lost in other species, raising questions about how mating and cell types are controlled. Analysis of the CUG leucine-to-serine genetic-code change reveals that 99% of ancestral CUG codons were erased and new ones arose elsewhere. Lastly, we revise the Candida albicans gene catalogue, identifying many new genes.
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spelling Evolution of pathogenicity and sexual reproduction in eight Candida genomesCandidaCodonConserved sequenceDiploidyGenes, FungalGenome, FungalMeiosisPolymorphism, GeneticReproductionSaccharomycesVirulenceEvolution, MolecularCandida species are the most common cause of opportunistic fungal infection worldwide. Here we report the genome sequences of six Candida species and compare these and related pathogens and non-pathogens. There are significant expansions of cell wall, secreted and transporter gene families in pathogenic species, suggesting adaptations associated with virulence. Large genomic tracts are homozygous in three diploid species, possibly resulting from recent recombination events. Surprisingly, key components of the mating and meiosis pathways are missing from several species. These include major differences at the mating-type loci (MTL); Lodderomyces elongisporus lacks MTL, and components of the a1/2 cell identity determinant were lost in other species, raising questions about how mating and cell types are controlled. Analysis of the CUG leucine-to-serine genetic-code change reveals that 99% of ancestral CUG codons were erased and new ones arose elsewhere. Lastly, we revise the Candida albicans gene catalogue, identifying many new genes.Nature Research2020-02-29T17:14:41Z2009-06-04T00:00:00Z2009-06-04info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10773/27729eng0028-083610.1038/nature08064Butler, GeraldineRasmussen, Matthew D.Lin, Michael F.Santos, Manuel A. S.Sakthikumar, SharadhaMunro, Carol A.Rheinbay, EstherGrabherr, ManfredForche, AnjaReedy, Jennifer L.Agrafioti, InoArnaud, Martha B.Bates, StevenBrown, Alistair J. P.Brunke, SaschaCostanzo, Maria C.Fitzpatrick, David A.Groot, Piet W. J. deHarris, DavidHoyer, Lois L.Hube, BernhardKlis, Frans M.Kodira, ChinnappaLennard, NicolaLogue, Mary E.Martin, RonnyNeiman, Aaron M.Nikolaou, ElissavetQuail, Michael A.Quinn, JanetSantos, Maria C.Schmitzberger, Florian F.Sherlock, GavinShah, PrachiSilverstein, Kevin A. T.Skrzypek, Marek S.Soll, DavidStaggs, RodneyStansfield, IanStumpf, Michael P. H.Sudbery, Peter E.Srikantha, ThyagarajanZeng, QiandongBerman, JudithBerriman, MatthewHeitman, JosephGow, Neil A. R.Lorenz, Michael CBirren, Bruce W.Kellis, ManolisCuomo, Christina A.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:53:32Zoai:ria.ua.pt:10773/27729Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:00:21.682490Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Evolution of pathogenicity and sexual reproduction in eight Candida genomes
title Evolution of pathogenicity and sexual reproduction in eight Candida genomes
spellingShingle Evolution of pathogenicity and sexual reproduction in eight Candida genomes
Butler, Geraldine
Candida
Codon
Conserved sequence
Diploidy
Genes, Fungal
Genome, Fungal
Meiosis
Polymorphism, Genetic
Reproduction
Saccharomyces
Virulence
Evolution, Molecular
title_short Evolution of pathogenicity and sexual reproduction in eight Candida genomes
title_full Evolution of pathogenicity and sexual reproduction in eight Candida genomes
title_fullStr Evolution of pathogenicity and sexual reproduction in eight Candida genomes
title_full_unstemmed Evolution of pathogenicity and sexual reproduction in eight Candida genomes
title_sort Evolution of pathogenicity and sexual reproduction in eight Candida genomes
author Butler, Geraldine
author_facet Butler, Geraldine
Rasmussen, Matthew D.
Lin, Michael F.
Santos, Manuel A. S.
Sakthikumar, Sharadha
Munro, Carol A.
Rheinbay, Esther
Grabherr, Manfred
Forche, Anja
Reedy, Jennifer L.
Agrafioti, Ino
Arnaud, Martha B.
Bates, Steven
Brown, Alistair J. P.
Brunke, Sascha
Costanzo, Maria C.
Fitzpatrick, David A.
Groot, Piet W. J. de
Harris, David
Hoyer, Lois L.
Hube, Bernhard
Klis, Frans M.
Kodira, Chinnappa
Lennard, Nicola
Logue, Mary E.
Martin, Ronny
Neiman, Aaron M.
Nikolaou, Elissavet
Quail, Michael A.
Quinn, Janet
Santos, Maria C.
Schmitzberger, Florian F.
Sherlock, Gavin
Shah, Prachi
Silverstein, Kevin A. T.
Skrzypek, Marek S.
Soll, David
Staggs, Rodney
Stansfield, Ian
Stumpf, Michael P. H.
Sudbery, Peter E.
Srikantha, Thyagarajan
Zeng, Qiandong
Berman, Judith
Berriman, Matthew
Heitman, Joseph
Gow, Neil A. R.
Lorenz, Michael C
Birren, Bruce W.
Kellis, Manolis
Cuomo, Christina A.
author_role author
author2 Rasmussen, Matthew D.
Lin, Michael F.
Santos, Manuel A. S.
Sakthikumar, Sharadha
Munro, Carol A.
Rheinbay, Esther
Grabherr, Manfred
Forche, Anja
Reedy, Jennifer L.
Agrafioti, Ino
Arnaud, Martha B.
Bates, Steven
Brown, Alistair J. P.
Brunke, Sascha
Costanzo, Maria C.
Fitzpatrick, David A.
Groot, Piet W. J. de
Harris, David
Hoyer, Lois L.
Hube, Bernhard
Klis, Frans M.
Kodira, Chinnappa
Lennard, Nicola
Logue, Mary E.
Martin, Ronny
Neiman, Aaron M.
Nikolaou, Elissavet
Quail, Michael A.
Quinn, Janet
Santos, Maria C.
Schmitzberger, Florian F.
Sherlock, Gavin
Shah, Prachi
Silverstein, Kevin A. T.
Skrzypek, Marek S.
Soll, David
Staggs, Rodney
Stansfield, Ian
Stumpf, Michael P. H.
Sudbery, Peter E.
Srikantha, Thyagarajan
Zeng, Qiandong
Berman, Judith
Berriman, Matthew
Heitman, Joseph
Gow, Neil A. R.
Lorenz, Michael C
Birren, Bruce W.
Kellis, Manolis
Cuomo, Christina A.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
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author
dc.contributor.author.fl_str_mv Butler, Geraldine
Rasmussen, Matthew D.
Lin, Michael F.
Santos, Manuel A. S.
Sakthikumar, Sharadha
Munro, Carol A.
Rheinbay, Esther
Grabherr, Manfred
Forche, Anja
Reedy, Jennifer L.
Agrafioti, Ino
Arnaud, Martha B.
Bates, Steven
Brown, Alistair J. P.
Brunke, Sascha
Costanzo, Maria C.
Fitzpatrick, David A.
Groot, Piet W. J. de
Harris, David
Hoyer, Lois L.
Hube, Bernhard
Klis, Frans M.
Kodira, Chinnappa
Lennard, Nicola
Logue, Mary E.
Martin, Ronny
Neiman, Aaron M.
Nikolaou, Elissavet
Quail, Michael A.
Quinn, Janet
Santos, Maria C.
Schmitzberger, Florian F.
Sherlock, Gavin
Shah, Prachi
Silverstein, Kevin A. T.
Skrzypek, Marek S.
Soll, David
Staggs, Rodney
Stansfield, Ian
Stumpf, Michael P. H.
Sudbery, Peter E.
Srikantha, Thyagarajan
Zeng, Qiandong
Berman, Judith
Berriman, Matthew
Heitman, Joseph
Gow, Neil A. R.
Lorenz, Michael C
Birren, Bruce W.
Kellis, Manolis
Cuomo, Christina A.
dc.subject.por.fl_str_mv Candida
Codon
Conserved sequence
Diploidy
Genes, Fungal
Genome, Fungal
Meiosis
Polymorphism, Genetic
Reproduction
Saccharomyces
Virulence
Evolution, Molecular
topic Candida
Codon
Conserved sequence
Diploidy
Genes, Fungal
Genome, Fungal
Meiosis
Polymorphism, Genetic
Reproduction
Saccharomyces
Virulence
Evolution, Molecular
description Candida species are the most common cause of opportunistic fungal infection worldwide. Here we report the genome sequences of six Candida species and compare these and related pathogens and non-pathogens. There are significant expansions of cell wall, secreted and transporter gene families in pathogenic species, suggesting adaptations associated with virulence. Large genomic tracts are homozygous in three diploid species, possibly resulting from recent recombination events. Surprisingly, key components of the mating and meiosis pathways are missing from several species. These include major differences at the mating-type loci (MTL); Lodderomyces elongisporus lacks MTL, and components of the a1/2 cell identity determinant were lost in other species, raising questions about how mating and cell types are controlled. Analysis of the CUG leucine-to-serine genetic-code change reveals that 99% of ancestral CUG codons were erased and new ones arose elsewhere. Lastly, we revise the Candida albicans gene catalogue, identifying many new genes.
publishDate 2009
dc.date.none.fl_str_mv 2009-06-04T00:00:00Z
2009-06-04
2020-02-29T17:14:41Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10773/27729
url http://hdl.handle.net/10773/27729
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0028-0836
10.1038/nature08064
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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