Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure

Detalhes bibliográficos
Autor(a) principal: Góbi, Sándor
Data de Publicação: 2020
Outros Autores: Reva, Igor, Tarczay, György, Rui Fausto
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/91161
https://doi.org/10.1016/j.molstruc.2020.128719
Resumo: In this work we report the effect of intermolecular interactions on the structure of thioacetamide (CH3CSNH2) as a function of temperature, monitored by IR spectroscopy. Thin films of amorphous thioacetamide ice were deposited at 10 K and gradually warmed up to 260 K. Irreversible spectral changes between 180 and 200 K provide evidence for crystallization of the ice. Quantum chemical computations on a dodecamer of thioacetamide aided the assignment of the IR spectrum of the amorphous ice for the first time and allowed reassessing some of the earlier vibrational assignments of the crystalline form. This provides fundamental knowledge regarding the structure determination of thioacetamide (amorphous or crystalline). Upon repeated cooling and annealing of the crystalline sample, reversible spectral changes could also be detected, indicating that at temperatures below 150 K the methyl group undergoes a hindered torsional motion, while at higher temperatures the vibrationally excited methyl group exhibits virtually barrierless torsion. This interpretation was supported by computations, which have also provided estimates for the mean H-bond energies in the crystal. Investigation of low-temperature thioacetamide ice might be of interest from the astrophysical point of view. Moreover, the reversible temperature dependence of the vibrational spectra for the compounds with internal methyl rotor, such as thioacetamide, could serve as a molecular thermometer for cryogenic crystals.
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spelling Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structureMolecular spectroscopyAmorphous and crystalline icesIrreversible and reversible temperature dependenceMethyl torsional motionMolecular thermometerIn this work we report the effect of intermolecular interactions on the structure of thioacetamide (CH3CSNH2) as a function of temperature, monitored by IR spectroscopy. Thin films of amorphous thioacetamide ice were deposited at 10 K and gradually warmed up to 260 K. Irreversible spectral changes between 180 and 200 K provide evidence for crystallization of the ice. Quantum chemical computations on a dodecamer of thioacetamide aided the assignment of the IR spectrum of the amorphous ice for the first time and allowed reassessing some of the earlier vibrational assignments of the crystalline form. This provides fundamental knowledge regarding the structure determination of thioacetamide (amorphous or crystalline). Upon repeated cooling and annealing of the crystalline sample, reversible spectral changes could also be detected, indicating that at temperatures below 150 K the methyl group undergoes a hindered torsional motion, while at higher temperatures the vibrationally excited methyl group exhibits virtually barrierless torsion. This interpretation was supported by computations, which have also provided estimates for the mean H-bond energies in the crystal. Investigation of low-temperature thioacetamide ice might be of interest from the astrophysical point of view. Moreover, the reversible temperature dependence of the vibrational spectra for the compounds with internal methyl rotor, such as thioacetamide, could serve as a molecular thermometer for cryogenic crystals.ELTE Excellence Program (1783-3/2018/FEKUTSTRAT)Elsevier2020-11-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/91161http://hdl.handle.net/10316/91161https://doi.org/10.1016/j.molstruc.2020.128719eng00222860https://www.sciencedirect.com/science/article/abs/pii/S0022286020310449Góbi, SándorReva, IgorTarczay, GyörgyRui Faustoinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-05-25T06:28:20Zoai:estudogeral.uc.pt:10316/91161Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:11:06.296361Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
title Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
spellingShingle Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
Góbi, Sándor
Molecular spectroscopy
Amorphous and crystalline ices
Irreversible and reversible temperature dependence
Methyl torsional motion
Molecular thermometer
title_short Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
title_full Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
title_fullStr Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
title_full_unstemmed Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
title_sort Amorphous and crystalline thioacetamide ice: Infrared spectra as a probe for temperature and structure
author Góbi, Sándor
author_facet Góbi, Sándor
Reva, Igor
Tarczay, György
Rui Fausto
author_role author
author2 Reva, Igor
Tarczay, György
Rui Fausto
author2_role author
author
author
dc.contributor.author.fl_str_mv Góbi, Sándor
Reva, Igor
Tarczay, György
Rui Fausto
dc.subject.por.fl_str_mv Molecular spectroscopy
Amorphous and crystalline ices
Irreversible and reversible temperature dependence
Methyl torsional motion
Molecular thermometer
topic Molecular spectroscopy
Amorphous and crystalline ices
Irreversible and reversible temperature dependence
Methyl torsional motion
Molecular thermometer
description In this work we report the effect of intermolecular interactions on the structure of thioacetamide (CH3CSNH2) as a function of temperature, monitored by IR spectroscopy. Thin films of amorphous thioacetamide ice were deposited at 10 K and gradually warmed up to 260 K. Irreversible spectral changes between 180 and 200 K provide evidence for crystallization of the ice. Quantum chemical computations on a dodecamer of thioacetamide aided the assignment of the IR spectrum of the amorphous ice for the first time and allowed reassessing some of the earlier vibrational assignments of the crystalline form. This provides fundamental knowledge regarding the structure determination of thioacetamide (amorphous or crystalline). Upon repeated cooling and annealing of the crystalline sample, reversible spectral changes could also be detected, indicating that at temperatures below 150 K the methyl group undergoes a hindered torsional motion, while at higher temperatures the vibrationally excited methyl group exhibits virtually barrierless torsion. This interpretation was supported by computations, which have also provided estimates for the mean H-bond energies in the crystal. Investigation of low-temperature thioacetamide ice might be of interest from the astrophysical point of view. Moreover, the reversible temperature dependence of the vibrational spectra for the compounds with internal methyl rotor, such as thioacetamide, could serve as a molecular thermometer for cryogenic crystals.
publishDate 2020
dc.date.none.fl_str_mv 2020-11-15
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/91161
http://hdl.handle.net/10316/91161
https://doi.org/10.1016/j.molstruc.2020.128719
url http://hdl.handle.net/10316/91161
https://doi.org/10.1016/j.molstruc.2020.128719
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 00222860
https://www.sciencedirect.com/science/article/abs/pii/S0022286020310449
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dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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